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Merged
ecmerkle merged 2 commits into from
Jan 4, 2026
Merged

Options #103

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9b51b88
set options + increment version
emstruong Dec 30, 2025
6fa35cf
Added option for target
emstruong Dec 30, 2025
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -34,7 +34,7 @@ Description: Fit a variety of Bayesian latent variable models, including confirm
factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
License: GPL (>= 3)
ByteCompile: true
Depends: R(>= 3.5.0), methods, Rcpp(>= 0.12.15)
Depends: R(>= 4.1.0), methods, Rcpp(>= 0.12.15)
Imports: stats, utils, graphics, lavaan(>= 0.6-18), coda, mnormt, nonnest2(>= 0.5-7), loo(>= 2.0), rstan(>= 2.26.0), rstantools(>= 1.5.0), RcppParallel (>= 5.0.1), bayesplot, Matrix, future.apply, tmvnsim, igraph
LinkingTo: StanHeaders (>= 2.26.0), rstan (>= 2.26.0), BH (>= 1.69.0), Rcpp (>= 0.12.15), RcppEigen (>= 0.3.3.4.0), RcppParallel (>= 5.0.1)
Suggests: runjags(>= 2.0.4-3), modeest(>= 2.3.3), rjags, cmdstanr, semTools, blavsam, tinytest
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6 changes: 3 additions & 3 deletions R/blavaan.R
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Expand Up @@ -11,7 +11,7 @@ blavaan <- function(..., # default lavaan arguments
mcmcextra = list(),
inits = "simple",
convergence = "manual",
target = "stan",
target = getOption("blavaan.target", "stan"),
save.lvs = FALSE,
wiggle = NULL,
wiggle.sd = 0.1,
Expand Down Expand Up @@ -1196,7 +1196,7 @@ blavaan <- function(..., # default lavaan arguments
bcfa <- bsem <- function(..., cp = "srs", dp = NULL,
n.chains = 3, burnin, sample, adapt,
mcmcfile = FALSE, mcmcextra = list(), inits = "simple",
convergence = "manual", target = "stan", save.lvs = FALSE, wiggle = NULL,
convergence = "manual", target = getOption("blavaan.target", "stan"), save.lvs = FALSE, wiggle = NULL,
wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE, seed = NULL,
bcontrol = list()) {

Expand Down Expand Up @@ -1237,7 +1237,7 @@ bcfa <- bsem <- function(..., cp = "srs", dp = NULL,
bgrowth <- function(..., cp = "srs", dp = NULL,
n.chains = 3, burnin, sample, adapt,
mcmcfile = FALSE, mcmcextra = list(), inits = "simple",
convergence = "manual", target = "stan", save.lvs = FALSE, wiggle = NULL,
convergence = "manual", target = getOption("blavaan.target", "stan"), save.lvs = FALSE, wiggle = NULL,
wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE, seed = NULL,
bcontrol = list()) {

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1 change: 1 addition & 0 deletions R/zzz.R
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Expand Up @@ -3,5 +3,6 @@
fields="Version")
packageStartupMessage("This is ",paste(pkgname, version))
packageStartupMessage('On multicore systems, we suggest use of future::plan("multicore") or\n', ' future::plan("multisession") for faster post-MCMC computations.')
packageStartupMessage('If cmdstanr is installed, consider setting options(blavaan.target = "cmdstan") for speed.')
}

6 changes: 3 additions & 3 deletions man/bcfa.Rd
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Expand Up @@ -7,9 +7,9 @@ Fit a Confirmatory Factor Analysis (CFA) model.}
bcfa(..., cp = "srs",
dp = NULL, n.chains = 3, burnin, sample,
adapt, mcmcfile = FALSE, mcmcextra = list(), inits = "simple",
convergence = "manual", target = "stan", save.lvs = FALSE,
wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE,
seed = NULL, bcontrol = list())
convergence = "manual", target = getOption("blavaan.target", "stan"),
save.lvs = FALSE, wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE,
jags.ic = FALSE, seed = NULL, bcontrol = list())
}
\arguments{
\item{...}{Default lavaan arguments. See \code{\link[lavaan]{lavaan}}.}
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2 changes: 1 addition & 1 deletion man/bgrowth.Rd
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Expand Up @@ -6,7 +6,7 @@ Fit a Growth Curve model.}
\usage{
bgrowth(..., cp = "srs", dp = NULL, n.chains = 3,
burnin, sample, adapt, mcmcfile = FALSE, mcmcextra = list(),
inits = "simple", convergence = "manual", target = "stan",
inits = "simple", convergence = "manual", target = getOption("blavaan.target", "stan"),
save.lvs = FALSE, wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE,
jags.ic = FALSE, seed = NULL, bcontrol = list())
}
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4 changes: 2 additions & 2 deletions man/blavaan.Rd
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Expand Up @@ -7,8 +7,8 @@ Fit a Bayesian latent variable model.}
blavaan(..., cp = "srs",
dp = NULL, n.chains = 3, burnin, sample,
adapt, mcmcfile = FALSE, mcmcextra = list(), inits = "simple",
convergence = "manual", target = "stan", save.lvs = FALSE,
wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE,
convergence = "manual", target = getOption("blavaan.target", "stan"),
save.lvs = FALSE, wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE,
seed = NULL, bcontrol = list())
}
\arguments{
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6 changes: 3 additions & 3 deletions man/bsem.Rd
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Expand Up @@ -7,9 +7,9 @@ Fit a Structural Equation Model (SEM).}
bsem(..., cp = "srs",
dp = NULL, n.chains = 3, burnin, sample,
adapt, mcmcfile = FALSE, mcmcextra = list(), inits = "simple",
convergence = "manual", target = "stan", save.lvs = FALSE,
wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE, jags.ic = FALSE,
seed = NULL, bcontrol = list())
convergence = "manual", target = getOption("blavaan.target", "stan"),
save.lvs = FALSE, wiggle = NULL, wiggle.sd = 0.1, prisamp = FALSE,
jags.ic = FALSE, seed = NULL, bcontrol = list())
}
\arguments{
\item{...}{Default lavaan arguments. See \code{\link[lavaan]{lavaan}}.}
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