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Merged
vsmalladi merged 3 commits into from
Feb 14, 2025
Merged

Add Snakemake to compatibility list #196

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9acda2d
Update README.md
johanneskoester Aug 30, 2023
f495fae
Merge branch 'develop' into develop
vsmalladi Sep 30, 2024
c7c57c8
Update compatibility status for TESK and TES Azure
vsmalladi Feb 14, 2025
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10 changes: 5 additions & 5 deletions README.md
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Expand Up @@ -59,11 +59,11 @@ TES Compliant Implementations

> Compatibility is assumed based on available documentation and limited tests performed on latest versions of implementations available as of December 2020.

| | cwl-tes | Cromwell | Nextflow |
| ----------- | ------------- | --------- | ---------|
| **Funnel** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes) | Compatible | [Compatible](https://www.nextflow.io/docs/latest/executor.html#ga4gh-tes) |
| **TESK** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes/pull/25) | [Compatible](https://cromwell.readthedocs.io/en/stable/backends/TES/) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) |
| **TES Azure** | Not tested | [Compatible](https://github.com/microsoft/CromwellOnAzure) | [Compatible](https://www.nextflow.io/docs/stable/executor.html#ga4gh-tes) |
| | cwl-tes | Cromwell | Nextflow | Snakemake |
| ----------- | ------------- | --------- | ---------| --------- |
| **Funnel** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes) | Compatible | [Compatible](https://www.nextflow.io/docs/latest/executor.html#ga4gh-tes) | [Compatible](https://snakemake.readthedocs.io/en/stable/executing/cloud.html#executing-a-snakemake-workflow-via-ga4gh-tes) |
| **TESK** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes/pull/25) | [Compatible](https://cromwell.readthedocs.io/en/stable/backends/TES/) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) | [Compatible](https://github.com/elixir-cloud-aai/demo-tes-hybrid-cloud/tree/main) |
| **TES Azure** | Not tested | [Compatible](https://github.com/microsoft/CromwellOnAzure) | [Compatible](https://www.nextflow.io/docs/stable/executor.html#ga4gh-tes) | [Compatible](https://github.com/microsoft/ga4gh-tes/blob/main/snakemake/examples/snakemake/README.md) |


TES Service Examples
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