Updating workflows/scRNAseq/scanpy-clustering from 0.1 to 0.2 #656
Updating workflows/scRNAseq/scanpy-clustering from 0.1 to 0.2 #656gxydevbot wants to merge 5 commits intogalaxyproject:mainfrom
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…Scanpy.ga - Replace all Manipulate Anndata tool filtering steps with Scanpy filter - Add complete URL for ORCID
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There are new updates, if you want to integrate them, close the PR and delete branch. |
...eq/scanpy-clustering/Preprocessing-and-Clustering-of-single-cell-RNA-seq-data-with-Scanpy.ga
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Looks good to me except the name of Bérénice
…ing-of-single-cell-RNA-seq-data-with-Scanpy.ga The name was autogenerated from the workflow editor Co-authored-by: Lucille Delisle <lucille.delisle@epfl.ch>
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There are new updates, if you want to integrate them, close the PR and delete branch. |
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There are new updates, if you want to integrate them, close the PR and delete branch. |
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There are new updates, if you want to integrate them, close the PR and delete branch. |
gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff. |
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There are new updates, they have been integrated to the PR, check the file diff. |
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There are new updates, they have been integrated to the PR, check the file diff. |
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There are new updates, they have been integrated to the PR, check the file diff. |
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There are new updates, they have been integrated to the PR, check the file diff. |
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There are new updates, they have been integrated to the PR, check the file diff. |
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Hello! This is an automated update of the following workflow: workflows/scRNAseq/scanpy-clustering. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.9+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.9+galaxy1toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.10.2+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.10.2+galaxy3toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.9+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.9+galaxy1toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy1toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.10.2+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.10.2+galaxy2toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.10.2+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.10.2+galaxy2toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.10.2+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.10.2+galaxy2toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.10.2+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.10.2+galaxy2The workflow release number has been updated from 0.1 to 0.2.
If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.