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Updating workflows/scRNAseq/scanpy-clustering from 0.1 to 0.2 #656

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Updating workflows/scRNAseq/scanpy-clustering from 0.1 to 0.2 #656

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bc822be
Updating workflows/scRNAseq/scanpy-clustering from 0.1 to 0.2
Jan 27, 2025
aca70e7
Update Preprocessing-and-Clustering-of-single-cell-RNA-seq-data-with-…
pavanvidem Jan 29, 2025
3e3b2f7
Update CHANGELOG.md
pavanvidem Jan 29, 2025
e9dc919
update mito annotation step
pavanvidem Jan 29, 2025
88e63dd
Update workflows/scRNAseq/scanpy-clustering/Preprocessing-and-Cluster…
pavanvidem Feb 6, 2025
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15 changes: 15 additions & 0 deletions workflows/scRNAseq/scanpy-clustering/CHANGELOG.md
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## [0.2] 2025-01-27

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.9+galaxy1`
- `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.10.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.10.2+galaxy3`
- `toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.9+galaxy1`
- `toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy1`
- `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.10.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.10.2+galaxy2`
- `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.10.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.10.2+galaxy2`
- `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.10.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.10.2+galaxy2`
- `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.10.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.10.2+galaxy2`

### Manual update
- Manipulate Anndata filtering steps were moved to Scanpy filter tool v1.10.2+galaxy3. Hence, replaced all Manipulate Anndata filtering steps with the latest Scanpy Filter steps.

## [0.1] 2024-10-09

First release.
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