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Stac harvester doi #9089

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e0baaba
add test
cmangeat Oct 31, 2025
748277d
use doi as cit:identifier
cmangeat Oct 31, 2025
65d9cab
use doi as onlineResource
cmangeat Oct 31, 2025
fa041a1
move doi in identification section two levels up so to allow its inde…
cmangeat Nov 4, 2025
6a5af88
rebase's consequence
cmangeat Dec 2, 2025
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32 changes: 32 additions & 0 deletions schemas/iso19115-3.2018/src/main/plugin/iso19115-3.2018/convert/stac-to-iso19115-3.xsl
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Expand Up @@ -9,6 +9,8 @@
xmlns:mri="http://standards.iso.org/iso/19115/-3/mri/1.0"
xmlns:gco="http://standards.iso.org/iso/19115/-3/gco/1.0"
xmlns:gex="http://standards.iso.org/iso/19115/-3/gex/1.0"
xmlns:gcx="http://standards.iso.org/iso/19115/-3/gcx/1.0"
xmlns:xlink="http://www.w3.org/1999/xlink"
xmlns:gml="http://www.opengis.net/gml/3.2"
xmlns:java-xsl-util="java:org.fao.geonet.util.XslUtil"
exclude-result-prefixes="#all">
Expand Down Expand Up @@ -142,6 +144,21 @@
else 'STAC Collection'" />
</gco:CharacterString>
</cit:title>
<xsl:if test="sci_doi">
<cit:identifier>
<mcc:MD_Identifier>
<mcc:code>
<gcx:Anchor xlink:href="{concat('https://doi.org/', sci_doi)}"><xsl:value-of select="sci_doi"/></gcx:Anchor>
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@jahow jahow Nov 7, 2025

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The extension that this field comes from (https://github.com/stac-extensions/scientific) says that a cite-as link should be present in the collection as well and give us a link to the actual DOI, without having to assemble this link ourselves. But in the sample used for the test this link doesn't exist, so I guess your approach is safer.

</mcc:code>
<mcc:codeSpace>
<gco:CharacterString>doi.org</gco:CharacterString>
</mcc:codeSpace>
<mcc:description>
<gco:CharacterString>Digital Object Identifier (DOI)</gco:CharacterString>
</mcc:description>
</mcc:MD_Identifier>
</cit:identifier>
</xsl:if>
</cit:CI_Citation>
</mri:citation>
<mri:abstract>
Expand Down Expand Up @@ -355,6 +372,21 @@
</cit:CI_OnlineResource>
</mrd:onLine>
</xsl:for-each>
<xsl:if test="sci_doi">
<mrd:onLine>
<cit:CI_OnlineResource>
<cit:linkage>
<gco:CharacterString><xsl:value-of select="concat('https://doi.org/', sci_doi)"/></gco:CharacterString>
</cit:linkage>
<cit:protocol>
<gco:CharacterString>DOI</gco:CharacterString>
</cit:protocol>
<cit:name>
<gco:CharacterString>Digital Object Identifier (DOI)</gco:CharacterString>
</cit:name>
</cit:CI_OnlineResource>
</mrd:onLine>
</xsl:if>
</mrd:MD_DigitalTransferOptions>
</mrd:transferOptions>
</mrd:MD_Distribution>
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5 changes: 5 additions & 0 deletions schemas/iso19115-3.2018/src/test/java/org/fao/geonet/schema/StacConversionTest.java
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Expand Up @@ -52,6 +52,11 @@ public void sentinel2RadiometricIndices() throws Exception {
transformAndCompare("convert/stac-to-iso19115-3.xsl", "sentinel-2-radiometric-indices-input.xml", "sentinel-2-radiometric-indices-output.xml");
}

@Test
public void biomassAnWood() throws Exception {
transformAndCompare("convert/stac-to-iso19115-3.xsl", "biomass-and-wood-input.xml", "biomass-and-wood-output.xml");
}

private void transformAndCompare(String scriptName, String inputFileName, String expectedFileName) throws Exception {
Path xslFile = getResourceInsideSchema(scriptName);
Path xmlFile = getResource("stacHarvester/" + inputFileName);
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91 changes: 91 additions & 0 deletions schemas/iso19115-3.2018/src/test/resources/stacHarvester/biomass-and-wood-input.xml
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@@ -0,0 +1,91 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<record>
<extent>
<spatial>
<bbox>
<array>-5.859595786155143</array>
<array>40.08242510778443</array>
<array>11.175837021340103</array>
<array>51.130598314425725</array>
</bbox>
</spatial>
<temporal>
<interval>
<array>2018-01-01T00:00:00Z</array>
<array>2024-12-30T00:00:00Z</array>
</interval>
</temporal>
</extent>
<stac_version>1.1.0</stac_version>
<sci_doi>10.5281/zenodo.15489231</sci_doi>
<keywords>forest</keywords>
<keywords>biomass</keywords>
<keywords>height</keywords>
<keywords>volume</keywords>
<keywords>France</keywords>
<keywords>remote sensing</keywords>
<keywords>LIDAR</keywords>
<keywords>Sentinel</keywords>
<keywords>GEDI</keywords>
<description>FORMS-T : Height, aboveground biomass and wood volume density time-series at 10 to 30 m resolution over france (2018-2024)</description>
<sci_citation>Schwartz, M. (2025). FORMS-T: Forest Multiple Source height, wood volume, and biomass time-series (2018-2024) in France at 10 to 30 m resolution [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15489231</sci_citation>
<type>Collection</type>
<title>FORMS-T</title>
<license>other</license>
<assets>
<QL>
<roles>thumbnail</roles>
<description>collection thumbnail</description>
<href>https://i.ibb.co/PvjGX01V/France-visu.png</href>
</QL>
</assets>
<contact>
<organization>Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL,CEA-CNRS-UVSQ, Université Paris-Saclay,Gif-sur-Yvette,91191, France</organization>
<name>Martin Schwartz</name>
<email>[email protected]</email>
</contact>
<links>
<rel>items</rel>
<href>https://stacapi-cdos.apps.okd.crocc.meso.umontpellier.fr/collections/forms-t/items</href>
<type>application/geo+json</type>
</links>
<links>
<rel>parent</rel>
<href>https://stacapi-cdos.apps.okd.crocc.meso.umontpellier.fr/</href>
<type>application/json</type>
</links>
<links>
<rel>root</rel>
<href>https://stacapi-cdos.apps.okd.crocc.meso.umontpellier.fr/</href>
<type>application/json</type>
</links>
<links>
<rel>self</rel>
<href>https://stacapi-cdos.apps.okd.crocc.meso.umontpellier.fr/collections/forms-t</href>
<type>application/json</type>
</links>
<links>
<rel>items</rel>
<href>https://api.stac.teledetection.fr/collections/forms-t/items</href>
<type>application/geo+json</type>
</links>
<links>
<rel>http://www.opengis.net/def/rel/ogc/1.0/queryables</rel>
<href>https://api.stac.teledetection.fr/collections/forms-t/queryables</href>
<type>application/schema+json</type>
<title>Queryables</title>
</links>
<links>
<rel>http://www.opengis.net/def/rel/ogc/1.0/queryables</rel>
<href>https://stacapi-cdos.apps.okd.crocc.meso.umontpellier.fr/collections/forms-t/queryables</href>
<type>application/schema+json</type>
<title>Queryables</title>
</links>
<id>forms-t</id>
<stac_extensions>https://stac-extensions.github.io/scientific/v1.0.0/schema.json</stac_extensions>
<providers>
<roles>producer</roles>
<name>Laboratoire des Sciences du Climat et de l'Environnement</name>
<url>https://www.lsce.ipsl.fr/</url>
</providers>
</record>
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