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Update emission_species.yml for consistency w/ GC 14.7.0+#413

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yantosca merged 1 commit intodevfrom
feature/add-mgly-and-other-emissions
Mar 2, 2026
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Update emission_species.yml for consistency w/ GC 14.7.0+#413
yantosca merged 1 commit intodevfrom
feature/add-mgly-and-other-emissions

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@yantosca yantosca commented Mar 2, 2026

Name and Institution (Required)

Name: Bob Yantosca
Institution: Harvard + GCST

Describe the update

This PR updates the list of emission species in benchmark/modules/emission_species.yml to be consistent with the emissions diagnostics that are saved in GEOS-Chem 14.7.0 and later.

Expected changes

This should avoid 'No emissions found for ___` warning messages when making the benchmark emissions tables.

$ python -m gcpy.benchmark.run_benchmark 1yr_fullchem_benchmark.yml 
Using configuration file 1yr_fullchem_benchmark.yml
The following plots and tables will be created for FullChemBenchmark
 - Table of emissions totals by species and inventory
Comparisons will be made for the following combinations:
 - GCC vs GCC

Ref species database: /n/home09/ryantosca/BM/1yr/14.7.0-rc.0/GCClassic/FullChem/species_database.yml
Dev species database: /n/home09/ryantosca/BM/1yr/14.7.0-rc.0/GCClassic/FullChem/species_database.yml

%%% Creating GCC vs. GCC emissions & inventory tables %%%
Computing emissions totals for ACET
Computing emissions totals for ACR
Computing emissions totals for ACTA
Computing emissions totals for ALD2
Computing emissions totals for ALK4
Computing emissions totals for ALK6
Computing emissions totals for BCPI
Computing emissions totals for BCPO
Computing emissions totals for BENZ
Computing emissions totals for BrSALA
Computing emissions totals for BrSALC
Computing emissions totals for C2H2
Computing emissions totals for C2H4
Computing emissions totals for C2H6
Computing emissions totals for C3H8
Computing emissions totals for C4H6
Computing emissions totals for CH2Br2
Computing emissions totals for CH2I2
Computing emissions totals for CH2IBr
Computing emissions totals for CH2ICl
Computing emissions totals for CH2O
Computing emissions totals for CHBr3
Computing emissions totals for CO
Computing emissions totals for DMS
Computing emissions totals for DSTbin1
Computing emissions totals for DSTbin2
Computing emissions totals for DSTbin3
Computing emissions totals for DSTbin4
Computing emissions totals for DSTbin5
Computing emissions totals for DSTbin6
Computing emissions totals for DSTbin7
Computing emissions totals for EOH
Computing emissions totals for ETNO3
Computing emissions totals for FURA
Computing emissions totals for GLYX
Computing emissions totals for H2O
Computing emissions totals for HCl
Computing emissions totals for HCOOH
Computing emissions totals for HNO3
Computing emissions totals for ISOP
Computing emissions totals for LIMO
Computing emissions totals for MACR
Computing emissions totals for MEK
Computing emissions totals for MENO3
Computing emissions totals for MGLY
Computing emissions totals for MOH
Computing emissions totals for MTPA
Computing emissions totals for MTPO
Computing emissions totals for MVK
Computing emissions totals for NH3
Computing emissions totals for NO
Computing emissions totals for NO2
Computing emissions totals for O3
Computing emissions totals for OCPI
Computing emissions totals for OCPO
Computing emissions totals for pFe
Computing emissions totals for PHEN
Computing emissions totals for PRPE
Computing emissions totals for RCHO
Computing emissions totals for SALA
Computing emissions totals for SALAAL
Computing emissions totals for SALACL
Computing emissions totals for SALC
Computing emissions totals for SALCAL
Computing emissions totals for SALCCL
Computing emissions totals for SO2
Computing emissions totals for SO4
Computing emissions totals for SOAP
Computing emissions totals for SOAS
Computing emissions totals for STYR
Computing emissions totals for TMB
Computing emissions totals for TOLU
Computing emissions totals for XYLE

Related Github Issue

@yantosca yantosca added topic: Benchmark Plots and Tables Issues pertaining to generating plots/tables from benchmark output category: Bug Fix Fixes a bug that was previously reported labels Mar 2, 2026
gcpy/benchmark/modules/emission_species.yml
- Updated to add emission species from the fullchem benchmark
  in 14.7.0 and later versions.
- Alphabetized the list of species

CHANGELOG.md
- Updated accordingly

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
@yantosca yantosca force-pushed the feature/add-mgly-and-other-emissions branch from 08a9cc0 to f983486 Compare March 2, 2026 19:55
@yantosca yantosca requested a review from msulprizio March 2, 2026 19:55
@yantosca yantosca marked this pull request as ready for review March 2, 2026 19:55
@yantosca yantosca self-assigned this Mar 2, 2026
@yantosca yantosca added this to the 1.8.0 milestone Mar 2, 2026
@yantosca yantosca merged commit 1aaf010 into dev Mar 2, 2026
20 checks passed
@yantosca yantosca deleted the feature/add-mgly-and-other-emissions branch March 2, 2026 22:12
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category: Bug Fix Fixes a bug that was previously reported topic: Benchmark Plots and Tables Issues pertaining to generating plots/tables from benchmark output

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Warning: species MGLY has emissions diagnostics but is not in benchmark_categories.yml

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