Workflow fix#11

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cmaceves wants to merge 85 commits intogkarthik:masterfrom

andersen-lab:workflow_fix

Commits on Feb 3, 2023

Commits on Feb 6, 2023

Commits on Feb 15, 2023

Merge pull request #152 from andersen-lab/issue_145
cmaceves
authored

Commits on Feb 20, 2023

Added option to read and write to stdcin.
gkarthik
committed
Merge branch 'issue_147' of https://github.com/andersen-lab/ivar into trim_io
gkarthik
committed
Added back check on header from input. Switched to cerr for primers.
gkarthik
committed

Commits on Feb 22, 2023

Commits on Feb 23, 2023

Commits on Feb 24, 2023

Commits on Mar 17, 2023

Commits on Mar 18, 2023

Corrected syntax error with iterator
gkarthik
committed

Commits on Mar 20, 2023

Commits on Mar 21, 2023

Commits on Mar 24, 2023

fixing continues to incrementing reads then continue
cmaceves
committed

Commits on Mar 27, 2023

Single function for iterating through reads.
gkarthik
committed

Commits on May 30, 2023

bump htsfile version and ubuntu version
cmaceves
committed

Commits on Jun 1, 2023

Merge pull request #166 from andersen-lab/issue_165
cmaceves
authored

Commits on Jul 20, 2023

fix build failure with gcc-13
emollier
committed

Commits on Apr 25, 2024

adding fix for case where unpaired reads have forward primers trimmed
cmaceves
committed

Commits on Jun 7, 2024

change the direction of codon and its translation to match the strand in gff file in ivar variants
asereewit
committed

Commits on Jun 17, 2024

update dockerfile for macos and update github workflow for config aux files
cmaceves
committed

Commits on Jun 19, 2024

Fixed ccpp workflow. Removed clang format check workflow.
gkarthik
committed

Commits on Feb 7, 2025

Added new argument -G to count gaps towards depth for variants.
gkarthik
committed

Commits on Jun 6, 2025

Update README.md
MarkZeller
authored

Commits on Aug 2, 2025