Add enrichment analyses #54
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* update recount2 volcano plot * add new template files for each recount2 template id * add new notebook to compare trends generated using two different template experiments * update figure after rerun simulation * clean up notebook comments * update fig generation based on comments * update comment about custom legend in plotting * update notebook based on PR
jjc2718
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Jan 21, 2021
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Looks good! My main point of confusion is just trying to figure out what the plots mean in 3_viz_pathway_ranking.ipynb, but otherwise everything seems fine to me.
Co-authored-by: Jake Crawford <[email protected]>
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The goal of this PR was to add other multiple enrichment methods to demonstrate the our simulation method can be plugged into other pipelines easily.
These changes were started in a previous PR, but was prematurely closed due to other changes that this PR depended on.
This PR has the following changes:
other_enrichment_methods.Rto run other enrichment analysis methodsother_enrichment_methods/