Skip to content

switch to r-lib/actions/setup-r-dependencies@v2 #274

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 10 commits into
base: main
Choose a base branch
from
Open

switch to r-lib/actions/setup-r-dependencies@v2 #274

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
1fcaf35
switch to r-lib/actions/setup-r-dependencies@v2
m7pr Jan 29, 2025
41e9e64
remove inputs that do not exist in r-lib/actions/setup-r-dependncies …
m7pr Jan 29, 2025
b9096a7
remove lookup-refs, skip-desc-branch, skip-desc-dev and repository-list
m7pr Jan 30, 2025
ba60dbe
Update .github/workflows/revdepcheck.yaml
m7pr Jan 31, 2025
1ed87bf
change repository-path to working-directory
m7pr Feb 3, 2025
d64903a
Merge branch 'rlib_setup_r_dependencies' of https://github.com/insigh…
m7pr Feb 3, 2025
46627aa
remove skip-install and restore-description
m7pr Feb 3, 2025
ba95801
Merge branch 'main' into rlib_setup_r_dependencies
m7pr Feb 3, 2025
b0b08e0
Merge branch 'main' into rlib_setup_r_dependencies
m7pr Feb 11, 2025
47dc57f
Merge branch 'main' into rlib_setup_r_dependencies
cicdguy May 25, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 1 addition & 7 deletions .github/workflows/bioccheck.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -61,12 +61,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""

concurrency:
group: bioccheck-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -158,7 +152,7 @@ jobs:
- name: Setup R dependencies 🎦
Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Adding a comment, so it can not be merged.
It should not be merged before other packages are not suited for changes introduced in this PR.
Other packages are tracked in this card insightsengineering/nestdevs-tasks#103

if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
33 changes: 3 additions & 30 deletions .github/workflows/build-check-install.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -138,40 +138,13 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
skip-desc-branch:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: boolean
default: false
skip-desc-dev:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: boolean
default: false
repository-list:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: "PPM=PPM@latest"
cache-version:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Passed to `r-lib/actions/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: "1"
default: 1
unit-test-report-brand:
description: Image URL to use in unit test report for branding. If empty, the default xunit-viewer brand will be used.
required: false
Expand Down Expand Up @@ -441,7 +414,7 @@ jobs:
if: >-
env.deps_installation_method == 'setup-r-dependencies'
&& inputs.install-deps-from-package-repositories == ''
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
8 changes: 1 addition & 7 deletions .github/workflows/pkgdown.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -128,12 +128,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""

concurrency:
group: docs-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -230,7 +224,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/revdepcheck.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -91,7 +91,7 @@ jobs:
shell: bash

- name: Install dependencies
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand All @@ -100,7 +100,7 @@ jobs:

- name: revdepcheck 🔄
id: revdepcheck
uses: insightsengineering/r-revdepcheck-action@main
uses: r-lib/r-revdepcheck-action@main
with:
github-token: ${{ steps.github-token.outputs.token }}
additional-env-vars: ${{ inputs.additional-env-vars }}
Expand Down
11 changes: 2 additions & 9 deletions .github/workflows/rhub.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -40,13 +40,6 @@ on:
gcc13,
noSuggests,
donttest
lookup-refs:
description: |
List of package references to be used for the feature branch.
Multiple entries in new lines or separated by commas.
required: false
default: ""
type: string

concurrency:
group: r-hub-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -96,7 +89,7 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down Expand Up @@ -149,7 +142,7 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
9 changes: 1 addition & 8 deletions .github/workflows/roxygen.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -49,13 +49,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
Passed to insightsengineering/setup-r-dependencies. See its documentation.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -152,7 +145,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
env.deps_installation_method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
8 changes: 1 addition & 7 deletions .github/workflows/test-coverage.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -90,12 +90,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -243,7 +237,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
8 changes: 1 addition & 7 deletions .github/workflows/validation.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -46,12 +46,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -147,7 +141,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down