Update support for iRODS #17341
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,53 @@ | ||
| <!-- | ||
| ~ Copyright (c) 2002-2016 iterate GmbH. All rights reserved. | ||
| ~ https://cyberduck.io/ | ||
| ~ | ||
| ~ This program is free software; you can redistribute it and/or modify | ||
| ~ it under the terms of the GNU General Public License as published by | ||
| ~ the Free Software Foundation; either version 2 of the License, or | ||
| ~ (at your option) any later version. | ||
| ~ | ||
| ~ This program is distributed in the hope that it will be useful, | ||
| ~ but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| ~ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| ~ GNU General Public License for more details. | ||
| --> | ||
|
|
||
| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> | ||
| <modelVersion>4.0.0</modelVersion> | ||
| <parent> | ||
| <groupId>ch.cyberduck</groupId> | ||
| <artifactId>parent</artifactId> | ||
| <version>9.2.0-SNAPSHOT</version> | ||
| </parent> | ||
| <artifactId>irods</artifactId> | ||
| <packaging>jar</packaging> | ||
|
|
||
| <dependencies> | ||
| <dependency> | ||
| <groupId>ch.cyberduck</groupId> | ||
| <artifactId>core</artifactId> | ||
| <version>${project.version}</version> | ||
| </dependency> | ||
| <dependency> | ||
| <groupId>ch.cyberduck</groupId> | ||
| <artifactId>test</artifactId> | ||
| <type>pom</type> | ||
| <scope>test</scope> | ||
| <version>${project.version}</version> | ||
| </dependency> | ||
| </dependencies> | ||
|
|
||
| <build> | ||
| <plugins> | ||
| <plugin> | ||
| <groupId>org.apache.maven.plugins</groupId> | ||
| <artifactId>maven-failsafe-plugin</artifactId> | ||
| <configuration> | ||
| <skipTests>true</skipTests> | ||
| </configuration> | ||
| </plugin> | ||
| </plugins> | ||
| </build> | ||
| </project> | ||
|
|
|
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> | ||
| <plist version="1.0"> | ||
| <dict> | ||
| <key>Protocol</key> | ||
| <string>irods</string> | ||
| <key>Vendor</key> | ||
| <string>iplant</string> | ||
| <key>Description</key> | ||
| <string>iPlant Data Store</string> | ||
| <key>Hostname Configurable</key> | ||
| <false/> | ||
| <key>Port Configurable</key> | ||
| <false/> | ||
| <key>Default Hostname</key> | ||
| <string>data.iplantcollaborative.org</string> | ||
| <key>Region</key> | ||
| <string>iplant</string> | ||
| <key>Default Port</key> | ||
| <string>1247</string> | ||
| <key>Username Placeholder</key> | ||
| <string>iPlant username</string> | ||
| <key>Password Placeholder</key> | ||
| <string>iPlant password</string> | ||
| <key>Authorization</key> | ||
| <string>STANDARD</string> | ||
| </dict> | ||
| </plist> |
|
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,151 @@ | ||
| irods.host=172.20.0.2 | ||
| irods.port=1247 | ||
| irods.zoneName=tempZone | ||
|
|
||
| # STANDARD | PAM AUTH | ||
| irods.auth.scheme=STANDARD | ||
| default.storage.resource= | ||
|
|
||
| # sets jargon ssl negotiation policy for the client. Leaving to DONT_CARE defers to the server, and is recommended | ||
| # NO_NEGOTIATION, CS_NEG_REFUSE, CS_NEG_REQUIRE, CS_NEG_DONT_CARE | ||
| ssl.negotiation.policy=CS_NEG_REFUSE | ||
|
|
||
| ########################################################## | ||
| # jargon properties settings | ||
| utilize.packing.streams=true | ||
|
|
||
| # jargon now supports checksum calculation for streaming uploads. This does not currently verify, but does store if set to true | ||
| compute.checksum=true | ||
|
|
||
| ###################################### | ||
| # other irods environment | ||
|
|
||
| # HTTP connection for RMD | ||
| rmd.connection.timeout=500 | ||
| rmd.connection.port=8000 | ||
|
|
||
| # Reverse DNS lookup on dashboard | ||
| reverse.dns.lookup=false | ||
|
|
||
| ###################################### | ||
| # msi props | ||
| populate.msi.enabled=false | ||
| illumina.msi.enabled=true | ||
|
|
||
| # MSI API version supported by this application | ||
| msi.api.version=1.X.X | ||
|
|
||
| msi.metalnx.list=libmsiget_illumina_meta.so,libmsiobjget_microservices.so,libmsiobjget_version.so,libmsiobjjpeg_extract.so,libmsiobjput_mdbam.so,libmsiobjput_mdbam.so,libmsiobjput_mdmanifest.so,libmsiobjput_mdvcf.so,libmsiobjput_populate.so | ||
|
|
||
| msi.irods.list=libmsisync_to_archive.so,libmsi_update_unixfilesystem_resource_free_space.so,libmsiobjput_http.so,libmsiobjput_irods.so,libmsiobjget_irods.so,libmsiobjget_http.so,libmsiobjput_slink.so,libmsiobjget_slink.so | ||
|
|
||
| msi.irods.42.list=libmsisync_to_archive.so,libmsi_update_unixfilesystem_resource_free_space.so | ||
|
|
||
| msi.other.list= | ||
| ###################################### | ||
| # global feature flags that serve as defaults. Note that the info handling will manipulate aspects of the data profiler, | ||
| # so by default some things are set to null to be turned on by the service depending on the view requested (e.g. acl, metadata, replicas) and should be left 'false' as a default, | ||
| # but other aspects, such as metadata templating and mime type detection, can be globally turned on or off depending on the implmenetation. | ||
| # controls access to features globally | ||
| metalnx.enable.tickets=false | ||
| # disable automatic detection and running of rules on upload | ||
| metalnx.enable.upload.rules=false | ||
| # download size limit in megabytes (6000=6GB) | ||
| metalnx.download.limit=6000 | ||
| # show dashboard (off by default due to performance issues) | ||
| metalnx.enable.dashboard=false | ||
| ###################################### | ||
| # info home page feature flags | ||
| # this controls the behavior of the data profiler and what information it will gather | ||
| irodsext.dataprofiler.retrieve.tickets=false | ||
| # process starred or favorites | ||
| irodsext.dataprofiler.retrieve.starred=true | ||
| # process shared | ||
| irodsext.dataprofiler.retrieve.shared=false | ||
| # tags and comments | ||
| irodsext.dataprofiler.retrieve.tags.and.comments=false | ||
| # metadata templates (currently not implemented) | ||
| irodsext.dataprofiler.retrieve.metadata.templates=false | ||
| # save data type information for later use | ||
| irodsext.datatyper.persist.data.types=false | ||
| # perform a detailed versus a lightweight data typing, which may involve processing the file contents | ||
| irodsext.datatyper.detailed.determination=false | ||
|
|
||
| ############################# | ||
| # misc ui configuration niceties | ||
| ############################# | ||
| # allow translation of iRODS auth types to user friendly names in login | ||
| # in the form irodstype:displaytype| | ||
| metalnx.authtype.mappings=PAM:PAM|STANDARD:Standard | ||
|
|
||
| ############################# | ||
| # JWT configuration (necessary when using search and notification services). Otherwise can be left as-is and ignored | ||
| ############################# | ||
| jwt.issuer=metalnx | ||
| jwt.secret=thisisasecretthatisverysecretyouwillneverguessthiskey | ||
| jwt.algo=HS384 | ||
|
|
||
| ############################# | ||
| # Pluggable search configuration. Turn on and off pluggable search globally, and configure search endpoints. | ||
| # N.B. pluggable search also requires provisioning of the jwt.* information above | ||
| ############################# | ||
| # configured endpoints, comma delimited in form https://host.com/v1 | ||
| # Note the commented out URL which matches up to the irods-contrib/file-and-metadata-indexer docker compose assembly. In order to | ||
| # utilize this assembly you need to uncomment the URL and set pluggablesearch.enabled to true | ||
| pluggablesearch.endpointRegistryList= | ||
| # enable pluggable search globally and show the search GUI components | ||
| pluggablesearch.enabled=false | ||
| # display the older file and properties search in the menu, if you are running the elasticsearch standard plugin this is probably | ||
| # a menu item to turn off | ||
| classicsearch.enabled=true | ||
| # JWT subject claim used to access search endpoint for data gathering. User searches will utilize the name of the individual | ||
| pluggablesearch.endpointAccessSubject=metalnx | ||
| # timeout for info/attribute gathering, set to 0 for no timeout | ||
| pluggablesearch.info.timeout=0 | ||
| # timeout for actual search, set to 0 for no timeout | ||
| pluggablesearch.search.timeout=0 | ||
|
|
||
| ############################# | ||
| # Pluggable shopping cart and export plugin configuration. | ||
| # Turn on and off pluggable shopping cart globally, and configure export endpoints. | ||
| # N.B. plugins also requires provisioning of the jwt.* information above | ||
| ############################# | ||
|
|
||
| # enable pluggable export globally and show the export GUI components | ||
| pluggableshoppingcart.enabled=false | ||
|
|
||
| # configured endpoints, comma delimited in form https://host.com/v1 | ||
| pluggablepublishing.endpointRegistryList= | ||
| # timeout for info/attribute gathering, set to 0 for no timeout | ||
| pluggablepublishing.info.timeout=0 | ||
|
|
||
| # timeout for actual publishing, set to 0 for no timeout | ||
| pluggablepublishing.publishing.timeout=0 | ||
|
|
||
| # server rule engine instance that will provide the galleryview listing | ||
| gallery_view.rule_engine_plugin.instance_name=irods_rule_engine_plugin-irods_rule_language-instance | ||
|
|
||
| ########################################################## | ||
| # Metadata Masking Properties | ||
| # | ||
| # Excludes metadata when the attribute name starts with at least one prefix. | ||
| # Multiple prefixes can be defined by separating them with the character sequence defined | ||
| # by metalnx.metadata.mask.delimiter. | ||
| # | ||
| # For example, the configuration below will hide any metadata that contains an attribute | ||
| # starting with "irods::", "metalnx-", or "_system_". | ||
| # | ||
| # metalnx.metadata.mask.prefixes=irods::;metalnx-;_system_ | ||
| # metalnx.metadata.mask.delimiter=; | ||
| # | ||
| # Use the iRODS Metadata Guard rule engine plugin to protect your metadata namespaces from | ||
| # being modified. | ||
| metalnx.metadata.mask.prefixes= | ||
| metalnx.metadata.mask.delimiter=, | ||
|
|
||
|
|
||
| ########################################################## | ||
| # Setting to enable/disable the "Public" sidebar link. | ||
| # The default is "false" (hidden) | ||
| ########################################################## | ||
| sidebar.show.public=false |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Expose iRODS options for secure communication and various other options.