Project Structure

GenScore/ ├── data/ # Sample VCFs, annotations, test sets ├── genscore/ # Python package with modules │ ├── init.py │ ├── io.py # Input parsing (VCF reader) │ ├── gene_mapper.py # Map variants to genes │ ├── scorer.py # Score genes by variant effect │ ├── pathway.py # Map genes to pathways │ └── viz.py # Create pathway visualizations ├── tests/ # Unit tests (pytest) ├── cli.py # CLI entry point ├── requirements.txt ├── Dockerfile └── README.md