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Add config YAML support for reproducibility.

Status: Open.

#24 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Error handling: file not found, malformed input, etc.

Status: Open.

#23 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Include --help, --version, and usage hints.

Status: Open.

#22 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Integrate all steps with argparse or typer.

Status: Open.

#21 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

US5: Run as End-to-End CLI Tool

Status: Open.

#20 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Unit tests: pathway matching logic, empty input handling.

Status: Open.

#19 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Optional: visualize Reactome ID pathways with annotations.

Status: Open.

#18 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Create simple bar chart: # of hits per pathway.

Status: Open.

#17 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Match filtered genes to pathways.

Status: Open.

#16 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Query Reactome API for pathway membership.

Status: Open.

#15 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

US4: Pathway Mapping

Status: Open.

#14 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025

Unit test graph builder (e.g., # of nodes, labels, color attributes).

Status: Open.

#13 In josefinelantz/GenScore;

· josefinelantz opened on May 16, 2025