feat: add an option to output MD in the XA tag#439
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This requires us to patch bwa, which we store in the patches sub-directory. They are applied before we build, and reverted after the build completes (regardless of success). They can be removed when the bwa PRs are merged and submodule updated. See: lh3/bwa#438 See: lh3/bwa#439
nh13
added a commit
to fulcrumgenomics/pybwa
that referenced
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Jan 17, 2025
This requires us to patch bwa, which we store in the patches sub-directory. They are applied before we build, and reverted after the build completes (regardless of success). They can be removed when the bwa PRs are merged and submodule updated. See: lh3/bwa#438 See: lh3/bwa#439
nh13
added a commit
to fulcrumgenomics/pybwa
that referenced
this pull request
Jan 17, 2025
This requires us to patch bwa, which we store in the patches sub-directory. They are applied before we build, and reverted after the build completes (regardless of success). They can be removed when the bwa PRs are merged and submodule updated. See: lh3/bwa#438 See: lh3/bwa#439
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Prefer to keep bwa simple. At this point, few users would need this feature. |
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This is useful when we want to inspect all the hits.