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fix(nextclade): align dataset metadata with schema#358

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ivan-aksamentov merged 1 commit intomasterfrom
fix/nextclade-align-metadata-schema
Mar 6, 2026
Merged

fix(nextclade): align dataset metadata with schema#358
ivan-aksamentov merged 1 commit intomasterfrom
fix/nextclade-align-metadata-schema

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Remove obsolete top-level metadata fields from all 4 Nextclade dataset configs.

These fields are not defined in the pathogen.json schema and are silently ignored by Nextclade. The enabled and official fields do not exist in the schema at all. The deprecated and experimental flags belong under attributes but are both false (the default), so they are removed rather than moved.

Field Action Datasets
deprecated: false Remove (default is false) all-clades, clade-i, clade-iib, lineage-b.1
experimental: false Remove (default is false) all-clades, clade-i, clade-iib, lineage-b.1
enabled: true Remove (not in schema) all-clades, clade-i, clade-iib, lineage-b.1
official: true Remove (not in schema) all-clades, clade-i, clade-iib, lineage-b.1
  • Remove deprecated, experimental, enabled, official from 4 dataset configs

⚠️ The existing datasets in nextclade_data are already patched in nextstrain/nextclade_data#436, so no immediate resubmission is needed. But without this upstream fix, the obsolete fields will reappear on the next dataset submission from this workflow.

ℹ️ See pathogen.json schema for the PathogenJson definition.

  1. Related to: fix: update mpox dataset schema fields nextclade_data#436

@ivan-aksamentov ivan-aksamentov merged commit 4d05760 into master Mar 6, 2026
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@ivan-aksamentov ivan-aksamentov deleted the fix/nextclade-align-metadata-schema branch March 6, 2026 18:18
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