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fix: update mpox dataset schema fields#436

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ivan-aksamentov merged 1 commit intomasterfrom
fix/nextstrain-mpox-schema-defects
Mar 6, 2026
Merged

fix: update mpox dataset schema fields#436
ivan-aksamentov merged 1 commit intomasterfrom
fix/nextstrain-mpox-schema-defects

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This PR normalizes the Nextstrain mpox dataset metadata to the current Nextclade schema so rebuild warnings disappear across all maintained mpox variants and generated output stays consistent across the family.

  • Move top-level deprecated and experimental into attributes.* for data/nextstrain/mpox/all-clades/pathogen.json, data/nextstrain/mpox/clade-i/pathogen.json, data/nextstrain/mpox/clade-iib/pathogen.json, and data/nextstrain/mpox/lineage-b.1/pathogen.json
  • Remove obsolete enabled and official fields from the same four mpox pathogen.json files
  • Remove qc.missingData.scoreWeight from the same four mpox pathogen.json files

Affected datasets: nextstrain/mpox/all-clades, nextstrain/mpox/clade-i, nextstrain/mpox/clade-iib, nextstrain/mpox/lineage-b.1

Base automatically changed from fix/nextstrain-measles-schema-defects to master March 6, 2026 16:09
@ivan-aksamentov ivan-aksamentov merged commit cd88bd6 into master Mar 6, 2026
@ivan-aksamentov ivan-aksamentov deleted the fix/nextstrain-mpox-schema-defects branch March 6, 2026 16:09
@ivan-aksamentov
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Upstream fix: nextstrain/mpox#358

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