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JoseEspinosaJoseEspinosa
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Merge branch 'updates' of https://github.com/JoseEspinosa/nf-core-chipseq into updates
2 parents ab04e58 + fce3e6c commit 07134ee

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‎modules.json‎

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"bowtie2/align": {
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"branch": "master",
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]
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},
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]
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},
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]
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},
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},
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"fastq_align_chromap",
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],
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"installed_by": ["fastq_align_chromap", "modules"],
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"patch": "modules/nf-core/chromap/chromap/chromap-chromap.diff"
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},
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"chromap/index": {
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"installed_by": ["modules"]
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},
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"fastqc": {
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"fastq_fastqc_umitools_trimgalore",
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
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},
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"installed_by": ["modules"]
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"installed_by": ["modules"]
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"homer/annotatepeaks": {
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"installed_by": ["modules"]
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"macs3/callpeak": {
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"installed_by": ["modules"]
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},
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"multiqc": {
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"git_sha": "b80f5fd12ff7c43938f424dd76392a2704fa2396",
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"installed_by": ["modules"]
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"phantompeakqualtools": {
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"installed_by": ["modules"]
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},
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"picard/collectmultiplemetrics": {
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"installed_by": ["modules"]
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},
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"preseq/lcextrap": {
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"installed_by": ["bam_stats_samtools", "modules"]
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"samtools/index": {
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"samtools/stats": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": ["bam_stats_samtools", "modules"]
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"subread/featurecounts": {
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"installed_by": ["modules"]
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"trimgalore": {
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"fastq_fastqc_umitools_trimgalore",
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"modules"
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
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},
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"ucsc/bedgraphtobigwig": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"modules"
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"installed_by": ["modules"]
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},
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"umitools/extract": {
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"fastq_fastqc_umitools_trimgalore"
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"installed_by": ["fastq_fastqc_umitools_trimgalore"]
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},
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"untar": {
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"untarfiles": {
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
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"modules"
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"installed_by": ["modules"]
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}
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}
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},
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"bam_markduplicates_picard": {
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": ["subworkflows"]
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"bam_sort_stats_samtools": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"fastq_align_bowtie2",
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"fastq_align_bwa",
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"fastq_align_chromap"
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]
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"bam_markduplicates_picard",
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"bam_sort_stats_samtools"
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"installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools"]
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"fastq_align_bowtie2": {
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"branch": "master",
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"git_sha": "0eacd714effe5aac1c1de26593873960b3346cab",
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"subworkflows"
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"installed_by": ["subworkflows"]
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"fastq_align_bwa": {
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"branch": "master",
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"git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
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"installed_by": ["subworkflows"]
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},
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"fastq_align_chromap": {
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"branch": "master",
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"subworkflows"
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"installed_by": ["subworkflows"]
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"utils_nextflow_pipeline": {
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"installed_by": ["subworkflows"]
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},
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"utils_nfvalidation_plugin": {
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"installed_by": ["subworkflows"]
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}
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}
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}
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}
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}
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}
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}

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