nf-core · nourmahfel · Mar 25, 2025 · Mar 25, 2025 · Mar 25, 2025 · Mar 25, 2025
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -91,6 +91,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 > **NB:** Dependency has been **added** if just the new version information is present.
 > **NB:** Dependency has been **removed** if version information isn't present.
 
+## [3.0.1] - 2025-03-25
+
+### Enhancements
+
+- Replaced local `sniffles` module with the official `nf-core/sniffles` module for structural variant calling.
+  This improves maintainability and consistency with nf-core module standards.
+
 ## [2.0.1] - 2021-11-29
 
 ### Bug fix

diff --git a/modules.json b/modules.json
@@ -125,6 +125,11 @@
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
+                    "sniffles": {
+                        "branch": "master",
+                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "installed_by": ["modules"]
+                    },
                     "stringtie/merge": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",

diff --git a/modules/nf-core/sniffles/main.nf b/modules/nf-core/sniffles/main.nf
diff --git a/modules/nf-core/sniffles/meta.yml b/modules/nf-core/sniffles/meta.yml