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Accept multiple EPIs/SBRefs for reference image calculation

Status: Closed (completed).

#399 In nipreps/niworkflows;

· by tsalo was closed on Jun 8, 2020

EPI masking: minimize run-to-run difference using a soft mask

backwards compatible

effort:mediumEstimated medium effort taskEstimated medium effort task

enhancement

impact:highEstimated high impact taskEstimated high impact task

Status: Closed (completed).

#476 In nipreps/niworkflows;

· by oesteban was closed on Jun 5, 2020

MAINT: remove PY35 workarounds

effort:lowEstimated low effort taskEstimated low effort task

impact:lowEstimated low impact taskEstimated low impact task

Status: Closed (completed).

#486 In nipreps/niworkflows;

· by oesteban was closed on Jun 25, 2020

Split the ATROPOS refinement off of the brain extraction workflow

Status: Closed (completed).

#424 In nipreps/niworkflows;

· by oesteban was closed on Jun 5, 2020

Update boilerplate to correctly handle single-band references

workflows

Status: Closed (completed).

#413 In nipreps/niworkflows;

· by effigies was closed on Jun 8, 2020

Artifacts in mosaic plots when intersection of masks and visualization planes is minimal

backwards compatible

bug

effort:mediumEstimated medium effort taskEstimated medium effort task

impact:highEstimated high impact taskEstimated high impact task

reports

Status: Closed (completed).

#542 In nipreps/niworkflows;

· by oesteban was closed on Aug 11, 2020

ENH: Allow bold_reference_wf to accept multiple EPIs/SBRefs

api change

Status: Merged (completed).

nipreps/niworkflowsnumber 408

#408 In nipreps/niworkflows;

· by tsalo was closed on Jun 8, 2020

ENH: Numerical stability of EPI brain-masks using probabilistic prior

Status: Merged (completed).

nipreps/niworkflowsnumber 485

#485 In nipreps/niworkflows;

· by oesteban was closed on Jun 5, 2020

FIX: Segmentation plots aligned with cardinal axes

Status: Merged (completed).

nipreps/niworkflowsnumber 544

#544 In nipreps/niworkflows;

· by oesteban was closed on Aug 11, 2020

FIX: Avoid diverting CIFTI dtype from original BOLD

api change

Status: Merged (completed).

nipreps/niworkflowsnumber 532

#532 In nipreps/niworkflows;

· by mgxd was closed on Jun 9, 2020

ENH: Add <code>smooth</code> input to <code>RegridToZooms</code>

enhancement

Status: Merged (completed).

nipreps/niworkflowsnumber 549

#549 In nipreps/niworkflows;

· by oesteban was closed on Aug 13, 2020

MAINT: Finalize upstreaming of ants interfaces to nipype

Status: Merged (completed).

nipreps/niworkflowsnumber 550

#550 In nipreps/niworkflows;

· by oesteban was closed on Aug 14, 2020

MAINT: Finalize upstreaming of ants interfaces to nipype

Status: Closed (abandoned).

nipreps/niworkflowsnumber 506

#506 In nipreps/niworkflows;

· by oesteban was closed on Aug 12, 2020

ENH: Add a pure-Python interface to resample to specific resolutions

Status: Merged (completed).

nipreps/niworkflowsnumber 511

#511 In nipreps/niworkflows;

· by oesteban was closed on Jun 5, 2020