-
Notifications
You must be signed in to change notification settings - Fork 17
Switch from zenodo.json to CITATION.cff, add contributors #237
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Merged
Changes from all commits
Commits
Show all changes
2 commits
Select commit
Hold shift + click to select a range
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,12 @@ | ||
Oscar Esteban <[email protected]> | ||
Christopher J. Markiewicz <[email protected]> | ||
Christopher J. Markiewicz <[email protected]> <[email protected]> | ||
Mathias Goncalves <[email protected]> | ||
Mathias Goncalves <[email protected]> <[email protected]> | ||
Mathias Goncalves <[email protected]> <[email protected]> | ||
Julien Marabotto <[email protected]> | ||
Julien Marabotto <[email protected]> <[email protected]> | ||
Julien Marabotto <[email protected]> <[email protected]> | ||
Stefano Moia <[email protected]> | ||
Basile Pinsard <[email protected]> | ||
Jaume Banús <[email protected]> |
This file was deleted.
Oops, something went wrong.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,100 @@ | ||
cff-version: 1.2.0 | ||
title: "NiTransforms: A Python tool to read, represent, manipulate, and apply N-dimensional spatial transforms" | ||
license: MIT | ||
type: software | ||
url: https://github.com/nipy/nitransforms/ | ||
version: 24.1.1 | ||
date-released: 2024-12-18 | ||
abstract: | | ||
Spatial transforms formalize mappings between coordinates of objects in biomedical images. | ||
Transforms typically are the outcome of image registration methodologies, which estimate | ||
the alignment between two images. | ||
Image registration is a prominent task present in nearly all standard image processing | ||
and analysis pipelines. | ||
The proliferation of software implementations of image registration methodologies has | ||
resulted in a spread of data structures and file formats used to preserve and communicate | ||
transforms. | ||
This segregation of formats precludes the compatibility between tools and endangers the | ||
reproducibility of results. | ||
We propose a software tool capable of converting between formats and resampling images | ||
to apply transforms generated by the most popular neuroimaging packages and libraries | ||
(AFNI, FSL, FreeSurfer, ITK, and SPM). | ||
The proposed software is subject to continuous integration tests to check the | ||
compatibility with each supported tool after every change to the code base. | ||
Compatibility between software tools and imaging formats is a necessary bridge | ||
to ensure the reproducibility of results and enable the optimization and evaluation | ||
of current image processing and analysis workflows. | ||
keywords: | ||
- neuroimaging | ||
- spatial normalization | ||
|
||
authors: | ||
- family-names: Goncalves | ||
given-names: Mathias | ||
orcid: https://orcid.org/0000-0002-7252-7771 | ||
affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA" | ||
- family-names: Markiewicz | ||
given-names: Christopher J. | ||
orcid: https://orcid.org/0000-0002-6533-164X | ||
affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA" | ||
- family-names: Moia | ||
given-names: Stefano | ||
orcid: https://orcid.org/0000-0002-2553-3327 | ||
affiliation: "Basque Center on Cognition Brain and Language, San Sebastian, Spain" | ||
- family-names: Waller | ||
given-names: Lea | ||
orcid: https://orcid.org/0000-0002-3239-6957 | ||
affiliation: Charite Universitatsmedizin Berlin, Germany | ||
- family-names: Pinsard | ||
given-names: Basile | ||
orcid: https://orcid.org/0000-0002-4391-3075 | ||
affiliation: University of Montréal, Montréal, Canada | ||
- family-names: Banús | ||
given-names: Jaume | ||
orcid: https://orcid.org/0000-0001-9318-6323 | ||
- family-names: Visconti di Oleggio Castello | ||
given-names: Matteo | ||
orcid: https://orcid.org/0000-0001-7931-5272 | ||
affiliation: University of California Berkeley, Berkeley, CA, USA | ||
- family-names: Marabotto | ||
given-names: Julien | ||
orcid: https://orcid.org/0009-0003-7070-5217 | ||
affiliation: Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland | ||
- family-names: Ma | ||
given-names: Feilong | ||
orcid: https://orcid.org/0000-0002-6838-3971 | ||
affiliation: Dartmouth College, Hanover, NH, United States | ||
- family-names: Nielson | ||
given-names: Dylan | ||
orcid: https://orcid.org/0000-0003-4613-6643 | ||
affiliation: Machine Learning Team, National Institute of Mental Health, USA | ||
- family-names: Cluce | ||
given-names: Jon | ||
orcid: https://orcid.org/0000-0001-7590-5806 | ||
affiliation: Child Mind Institute, New York, NY, USA | ||
- family-names: Shain | ||
given-names: Cory | ||
orcid: https://orcid.org/0000-0002-2704-7197 | ||
affiliation: Stanford University, Stanford, CA, USA | ||
## When contributing, please copy and uncomment the following lines | ||
# - family-names: | ||
# given-names: | ||
# orcid: https://orcid.org/ | ||
# affiliation: | ||
- family-names: Ghosh | ||
given-names: Satrajit | ||
orcid: https://orcid.org/0000-0002-5312-6729 | ||
affiliation: "McGovern Institute for Brain Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; and Department of Otolaryngology, Harvard Medical School, Boston, MA, USA" | ||
- family-names: Poldrack | ||
given-names: Russell A. | ||
orcid: https://orcid.org/0000-0001-6755-0259 | ||
affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA" | ||
- family-names: Esteban | ||
given-names: Oscar | ||
orcid: https://orcid.org/0000-0001-8435-6191 | ||
affiliation: "Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland" | ||
|
||
identifiers: | ||
- description: Concept DOI for the software | ||
type: doi | ||
value: 10.5281/zenodo.5499693 |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
is this overriden by releases?
Uh oh!
There was an error while loading. Please reload this page.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
It gets overridden by Zenodo, but we should probably make updating it part of the release process so it's up-to-date in git and source archives.