Repositories list

• CMSPlus

  Public
  An R package for molecular subtyping by integrating the tumor microenviroment heterogeneity of colorectal cancer

  R

  •1•0•0•0•Updated Jan 4, 2026Jan 4, 2026

• CMSPlus_analysis

  Public
  This repository contains the codes used for figure plot in the CMSPlus paper.

  Jupyter Notebook

  •1•0•0•0•Updated Jan 4, 2026Jan 4, 2026

• ESCC_CMS

  Public
  This repository contains the primary code for the ESCC_CMS project, focusing on research and analysis related to Esophageal Squamous Cell Carcinoma (ESCC)

  1•2•0•0•Updated May 9, 2025May 9, 2025

• OvCa-lncRNA

  Public
  All code used for the data analysis of OvCa-lncRNA project

  0•0•0•0•Updated May 8, 2025May 8, 2025

• YOBC_code

  Public
  This repository contains R codes of young-onset breast cancer of data analysis and visualization

  0•0•0•0•Updated Apr 20, 2025Apr 20, 2025

• BC-DNAm-aging-clock

  Public
  This repository contains the primary codes for the young-onset breast cancer project, focusing on research and analysis related to DNA methylation-based aging c…

  MIT License

  •0•0•0•0•Updated Apr 5, 2025Apr 5, 2025

• isoseq2orf

  Public
  Pipeline to convert long-read sequencing data to a representative transcriptome for a cancer type and perform primary sequence characterization of the novel ORF…

  Shell

  •

  MIT License

  •1•0•0•0•Updated Mar 19, 2025Mar 19, 2025

• Lab-Rules

  Public
  The Code Management Policy, Standard Operating Procedures, and Server Information that the Laboratory Must Comply With.

  0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• 3Diso-TransFold

  Public
  A transcriptome-translatome-protein structure prediction pipeline

  Jupyter Notebook

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• TS-SNAD

  Public
  Shell

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• MSCRCclassifier

  Public
  R

  •1•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• MSOCclassifier

  Public
  R

  •1•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• GC-MIR200CHG

  Public
  Major code used for the data analysis of GC-MIR200CHG project

  0•0•0•0•Updated Oct 28, 2023Oct 28, 2023

• DeepCC

  Public
  DeepCC: a novel deep learning-based framework for cancer molecular subtype classification

  R

  •

  MIT License

  •17•21•2•0•Updated Dec 1, 2021Dec 1, 2021

• nemTar

  Public
  A method for cancer regulatory network inference and prioritization of potential therapeutic targets

  R

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Mar 3, 2021Mar 3, 2021

• PSRnet

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Feb 26, 2021Feb 26, 2021

• TNBCSE_code

  Public
  code used for the data analysis of TNBC super-enhancer project

  0•5•0•0•Updated Feb 1, 2021Feb 1, 2021

• HTSanalyzeR2

  Public
  HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data

  R

  •4•14•3•0•Updated Dec 2, 2020Dec 2, 2020

• deepcc_online

  Public
  HTML

  •1•0•0•0•Updated Aug 14, 2020Aug 14, 2020

• CC-and-SVZ-RNA-seq-analysis

  Public
  Code of corpus callosum and SVZ RNA-seq analysis

  1•0•0•0•Updated Jul 22, 2019Jul 22, 2019

• PAGnet_code

  Public
  Code of PAGnet

  R

  •0•3•0•0•Updated Mar 26, 2019Mar 26, 2019

• PAGnet

  Public
  PAGnet R package

  R

  •1•0•0•0•Updated Mar 20, 2019Mar 20, 2019

• HTSanalyzeR2_web

  Public
  website for R package: HTSanalyzeR2

  0•0•0•0•Updated Jul 11, 2018Jul 11, 2018

• HTSanalyzeR2_demo

  Public
  Online demo of 3 case studies

  HTML

  •0•0•0•0•Updated Mar 26, 2018Mar 26, 2018

• CityUHK-CompBio.github.io

  Public
  HTML

  •0•0•0•0•Updated Mar 10, 2018Mar 10, 2018