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@IBPA Integrative Biology and Predictive Analytics Group

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    39 repositories

    • FoodAtlas-KGv2

      Public
      Python
      •
      Apache License 2.0
      •0•1•12•0•Updated Feb 26, 2026Feb 26, 2026

    • A2H_PCDB_Obesity

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Feb 26, 2026Feb 26, 2026

    • Kairos.ai

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 22, 2026Feb 22, 2026

    • skill-flow

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 22, 2026Feb 22, 2026

    • NNLS-SNP

      Public
      The breed/variety composition ratio estimator
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • ARCADIAMP

      Public
      ARCADIAMP -- A computational platform based on discrete denoising diffusion probabilistic models (D3PM) and a two-stage ESM2 binary classifier to generate, clas…
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • PTFIFoodomics-Pilot

      Public
      Analyzing protein digestibility by integrating food proteomics and serum metabolomics
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Apr 22, 2025Apr 22, 2025

    • Lit2KG

      Public
      Python
      •
      Apache License 2.0
      •0•1•2•0•Updated Jan 29, 2025Jan 29, 2025

    • A2H

      Public
      Preclinical trial experimental design recommendation system.
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • DepressionProject

      Public
      Depression Project Code
      Python
      •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • FoodAtlas

      Public
      Python
      •
      Apache License 2.0
      •2•6•1•0•Updated Sep 3, 2024Sep 3, 2024

    • GlioblastomaAI

      Public
      Classifying glioblastoma patients undergoing treatments using biogenic amines in serums.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • MOMA

      Public
      Multi-Omics Modeling and Analytics
      machine-learningbioinformatics
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Aug 2, 2024Aug 2, 2024

    • CowMetritis

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Jun 17, 2024Jun 17, 2024

    • smoke_taint_prediction

      Public
      Repository of smoke taint project
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • AminoCompositionEstimator

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • SemiAutomatedFoodKBC

      Public
      Source code for "Semi-Automated Construction of Food Composition Knowledge Base." (Accepted by the 2nd AAAI AIAFS Workshop: https://arxiv.org/abs/2301.11322)
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 16, 2023Nov 16, 2023

    • LOVE

      Public
      Learning Ontologies Via Embeddings
      foodmachine-learningword2vecontologyartificial-intelligenceword-embedding
      Python
      •
      Apache License 2.0
      •2•12•1•2•Updated Jul 6, 2023Jul 6, 2023

    • KGLM

      Public
      Python
      •
      Apache License 2.0
      •2•18•1•0•Updated Nov 11, 2022Nov 11, 2022

    • KIDS

      Public
      Knowledge Integration and Decision Support
      Python
      •
      Apache License 2.0
      •6•7•1•0•Updated Jul 12, 2022Jul 12, 2022

    • IBPA-Collection-of-Reproducible-Code-and-Results

      Public
      Python
      •
      Apache License 2.0
      •3•5•0•0•Updated Apr 29, 2022Apr 29, 2022

    • OCB

      Public
      Omics Compendium Builder
      Roff
      •
      Apache License 2.0
      •0•0•1•0•Updated Aug 14, 2021Aug 14, 2021

    • OMMs

      Public
      Meal Design for Heterogeneous Glycan Content
      R
      •
      MIT License
      •0•0•0•1•Updated Jul 12, 2021Jul 12, 2021

    • transformers

      Public
      🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.
      Python
      •
      Apache License 2.0
      •32k•0•0•0•Updated Jul 6, 2021Jul 6, 2021

    • AntibioticResistance

      Public
      1•0•0•0•Updated Mar 27, 2021Mar 27, 2021

    • FODMAPsAndGutMicrobiome

      Public
      A meta-analysis studying the interplay of dietary FODMAPs, gut microbiome and health in irritable bowel syndrome (IBS).
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•3•0•0•Updated Jan 4, 2021Jan 4, 2021

    • PAMDB

      Public
      A Parts Database with Consensus Parameter Estimation for Synthetic Circuit Design
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • SBROME

      Public
      Synthetic Biology Reusable Optimization Methodology
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • ClusterMissForest

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • Cascade

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020