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@MyersResearchGroup Genetic Logic Lab

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    31 repositories

    • BuildCompiler

      Public
      SBOL2 utility functions to support build plan
      Python
      •
      MIT License
      •1•1•12•1•Updated Mar 17, 2026Mar 17, 2026

    • SeqImprove

      Public
      JavaScript
      •0•1•31•1•Updated Mar 13, 2026Mar 13, 2026

    • SynBioWorkflowExamples

      Public
      Examples of the usage of the Synthetic Biology workflow
      MIT License
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • SynBioSuite

      Public
      JavaScript
      •1•5•62•2•Updated Mar 10, 2026Mar 10, 2026

    • PUDU

      Public
      Protocol Unified Design Unit
      Python
      •
      MIT License
      •1•0•0•1•Updated Mar 5, 2026Mar 5, 2026

    • Xperimental-Data-Connector

      Public
      This package extracts experimental data and metadata, converts to stardard formats, uploads to SynBioHub and Flapjack, and connects them
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • iBioSim-API-Connector

      Public
      JavaScript
      •0•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • UCF2SBOL

      Public
      Java
      •1•0•2•3•Updated Feb 2, 2026Feb 2, 2026

    • AddGene2SBOL

      Public
      Java
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • iBioSim

      Public
      iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models …
      Java
      •
      Apache License 2.0
      •23•65•305•3•Updated Dec 23, 2025Dec 23, 2025

    • myersresearchgroup.github.io

      Public
      Myers Research Group's official webpage
      synthetic-biologyacademiaresearch-group
      synthetic-biologyacademiaresearch-group
      TeX
      •
      MIT License
      •9•14•9•0•Updated Dec 8, 2025Dec 8, 2025

    • SynBioSuite_Server

      Public archive
      A Python Flask server that converts Excel files into SBOL and uploads it into SBH and FJ
      Python
      •
      MIT License
      •0•0•7•0•Updated Dec 5, 2025Dec 5, 2025

    • Wetlab_Protocols

      Public
      A collection of all wetlab protocols used by the Genetic Logic Lab
      MIT License
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • Freezer_Duck

      Public
      -80 sensor that sends email warnings when temperature rises.
      C++
      •
      MIT License
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • OpenTrons_OT2_Protocols

      Public
      The genetic logic lab's Opentrons protocols
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated May 14, 2025May 14, 2025

    • RobustnessPrediction

      Public
      This repository contains the models and results presented in the paper: Evaluating the Contribution of Model Complexity in Predicting Robustness in Synthetic Ge…
      MIT License
      •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • Shai-et-al-Supporting-Information

      Public
      This repository contains the data-files and scripts necessary to reproduce the results of the "Investigating And Modeling the Factors that Effects the Performan…
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 11, 2023Oct 11, 2023

    • iBioSim-API

      Public
      An API for the Java-based synthetic biology simulation tool, iBioSim.
      apisimulationsynthetic-biology
      apisimulationsynthetic-biology
      JavaScript
      •0•1•0•0•Updated Nov 1, 2022Nov 1, 2022

    • bioSimPortal

      Public
      Flask API to facilitate communication between SBOLCanvas and iBioSim
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • reb2sac

      Public
      SBML Abstraction and Analysis Tool
      C
      •
      MIT License
      •1•1•9•0•Updated Jun 30, 2021Jun 30, 2021

    • Biosimulators_iBioSim

      Public
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Jun 26, 2021Jun 26, 2021

    • ATACS

      Public
      C
      •
      Apache License 2.0
      •1•10•66•1•Updated Jun 4, 2021Jun 4, 2021

    • ibiosim.github.io

      Public
      CSS
      •
      MIT License
      •1•0•4•0•Updated May 30, 2020May 30, 2020

    • iGEM2SBOL

      Public
      Java
      •0•0•0•0•Updated Apr 20, 2019Apr 20, 2019

    • Verilog2LPN

      Public
      A compiler for asynchronous Verilog to labeled Petri nets
      ANTLR
      •
      MIT License
      •0•0•1•0•Updated Jan 7, 2019Jan 7, 2019

    • LEMA

      Public
      Java
      •
      Apache License 2.0
      •0•1•67•0•Updated Jul 7, 2018Jul 7, 2018

    • GeneNet

      Public
      Genetic Network Learn Tool
      C++
      •
      MIT License
      •0•1•3•0•Updated Jan 21, 2018Jan 21, 2018

    • s2lpn

      Public
      Compiler from assembly files to labelled Petri nets
      C
      •
      MIT License
      •0•0•4•0•Updated Jan 3, 2017Jan 3, 2017

    • webpage

      Public
      0•0•2•0•Updated Dec 23, 2016Dec 23, 2016

    • Core

      Public
      0•0•57•0•Updated Nov 7, 2016Nov 7, 2016