Repositories list

• PlasticEnz

  Public

  msysbio/PlasticEnz’s past year of commit activity
  Python

  •0•2•0•0•Updated Feb 5, 2026Feb 5, 2026

• microbetag

  Public

  msysbio/microbetag’s past year of commit activity
  annotating microbial co-occurrence networks

  Python

  •

  GNU General Public License v3.0

  •6•12•12•2•Updated Oct 7, 2025Oct 7, 2025

• MGG

  Public
  Gui for Microbetag based on scNetViz

  Java

  •

  Apache License 2.0

  •6•4•4•0•Updated Aug 19, 2025Aug 19, 2025

• microbetagApp-public

  Public
  microbetag web service

  Python

  •0•1•6•0•Updated Aug 19, 2025Aug 19, 2025

• bacterial_growth

  Public
  a database and an interface for bacterial growth data

  pythonsqlgrowth-curves+ 1

  pythonsqlgrowth-curvesbacterial-database

  Python

  •3•2•14•2•Updated Jun 17, 2025Jun 17, 2025

• CellScanner

  Public

  msysbio/CellScanner’s past year of commit activity
  CellScanner counts microbial species in flow cytometry data of communities separately with the help of a classifier that is trained on mono-cultures.

  Python

  •

  GNU General Public License v3.0

  •1•1•6•1•Updated Apr 1, 2025Apr 1, 2025

• PlasticDaphnia-ISMEJ

  Public

  msysbio/PlasticDaphnia-ISMEJ’s past year of commit activity
  Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro

  HTML

  •0•1•0•0•Updated Feb 13, 2025Feb 13, 2025

• BTRI_mucin_study_data

  Public

  msysbio/BTRI_mucin_study_data’s past year of commit activity
  Processed RNA-seq and fermentation data for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and th…

  0•1•0•0•Updated Feb 13, 2024Feb 13, 2024

• BTRI_mucin_study_scripts

  Public
  Scripts for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamic…

  MATLAB

  •0•1•0•0•Updated Feb 17, 2023Feb 17, 2023

• .github

  Public
  msysbio-welcome

  0•2•0•0•Updated Dec 20, 2022Dec 20, 2022

• GutMicrobes2022

  Public
  Supplementary Material for van de Velde et al. Gut Microbes 2022

  R

  •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022