Repositories list

• hatch-protobuf

  Public
  Hatch plugin for generating Python files from Protocol Buffers .proto files

  Python

  •

  Other

  •6•14•2•2•Updated Mar 2, 2026Mar 2, 2026

• bonito

  Public
  A PyTorch Basecaller for Oxford Nanopore Reads

  nanoporepytorchbasecalling

  nanoporepytorchbasecalling

  Python

  •

  Other

  •133•429•4•1•Updated Feb 20, 2026Feb 20, 2026

• dorado

  Public
  Oxford Nanopore's Basecaller

  nanoporegenomicslibtorch+ 1

  nanoporegenomicslibtorchbasecalling

  C++

  •

  Other

  •112•802•91•2•Updated Feb 19, 2026Feb 19, 2026

• data-rambler

  Public
  An experimental language for a JSON query, transformation and streaming

  TypeScript

  •

  Mozilla Public License 2.0

  •0•2•6•0•Updated Feb 13, 2026Feb 13, 2026

• ts-argue

  Public
  TypeScript

  •

  Mozilla Public License 2.0

  •0•1•2•3•Updated Feb 12, 2026Feb 12, 2026

• ont-minimap2

  Public
  Cross platform builds for minimap2

  CMake

  •3•8•0•0•Updated Feb 11, 2026Feb 11, 2026

• modkit

  Public
  A bioinformatics tool for working with modified bases

  nanoporemethylationmodified-bases

  nanoporemethylationmodified-bases

  Rust

  •

  Other

  •26•254•264•3•Updated Jan 19, 2026Jan 19, 2026

• ont-output-specifications

  Public
  Specifications for output files from MinKNOW, dorado and others

  Python

  •0•6•0•0•Updated Jan 16, 2026Jan 16, 2026

• medaka

  Public

  nanoporetech/medaka’s past year of commit activity
  Sequence correction provided by ONT Research

  nanoporemedaka

  nanoporemedaka

  Python

  •

  Other

  •86•501•31•3•Updated Dec 8, 2025Dec 8, 2025

• pyspoa

  Public

  nanoporetech/pyspoa’s past year of commit activity
  Python bindings to spoa

  nanoporealignmentpoa+ 1

  nanoporealignmentpoamultiple-sequence-alignment

  Python

  •

  Other

  •4•22•3•0•Updated Dec 3, 2025Dec 3, 2025

• pod5-file-format

  Public

  nanoporetech/pod5-file-format’s past year of commit activity
  Pod5: a high performance file format for nanopore reads.

  nanoporefile-formatapache-arrow

  nanoporefile-formatapache-arrow

  C++

  •

  Other

  •37•174•48•2•Updated Nov 19, 2025Nov 19, 2025

• pomfret

  Public
  C

  •2•27•2•0•Updated Nov 14, 2025Nov 14, 2025

• minknow_api

  Public

  nanoporetech/minknow_api’s past year of commit activity
  Protobuf and gRPC specifications for the MinKNOW API

  Python

  •

  Other

  •16•68•38•2•Updated Oct 29, 2025Oct 29, 2025

• fast-ctc-decode

  Public
  Blitzing Fast CTC Beam Search Decoder

  beam-searchviterbictc-decode

  beam-searchviterbictc-decode

  Rust

  •

  MIT License

  •28•186•3•1•Updated Oct 27, 2025Oct 27, 2025

• dorado-docs

  Public
  Dorado Documentation

  Python

  •

  Other

  •1•7•0•0•Updated Aug 4, 2025Aug 4, 2025

• rerio

  Public
  Research release basecalling models and configurations

  nanoporebasecalling

  nanoporebasecalling

  Python

  •

  Other

  •11•117•4•1•Updated May 21, 2025May 21, 2025

• ont-spectre

  Public
  Python

  •

  Other

  •3•12•6•1•Updated May 2, 2025May 2, 2025

• vbz_compression

  Public
  VBZ compression plugin for nanopore signal data

  compressionnanoporehdf5

  compressionnanoporehdf5

  C++

  •

  Mozilla Public License 2.0

  •13•43•21•1•Updated Apr 7, 2025Apr 7, 2025

• homebrew-tap

  Public

  nanoporetech/homebrew-tap’s past year of commit activity
  Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

  homebrewnanoporecasks+ 1

  homebrewnanoporecasksepi2me

  Ruby

  •0•7•0•0•Updated Dec 24, 2024Dec 24, 2024

• read_until_api

  Public

  nanoporetech/read_until_api’s past year of commit activity
  Read Until client library for Nanopore Sequencing

  Python

  •

  Other

  •12•109•0•0•Updated Sep 25, 2024Sep 25, 2024

• remora

  Public

  nanoporetech/remora’s past year of commit activity
  Methylation/modified base calling separated from basecalling.

  nanoporemethylationbasecalling

  nanoporemethylationbasecalling

  Python

  •

  Other

  •26•184•16•1•Updated Sep 17, 2024Sep 17, 2024

• pomoxis

  Public
  Analysis components from Oxford Nanopore Research

  Python

  •

  Other

  •23•96•10•1•Updated Sep 4, 2024Sep 4, 2024

• sqlpad

  Public
  Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowfl…

  JavaScript

  •

  MIT License

  •817•0•0•0•Updated May 14, 2024May 14, 2024

• Clair3

  Public
  Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling

  Python

  •36•6•0•0•Updated Mar 25, 2024Mar 25, 2024

• DTR-phage-pipeline

  Public
  Python

  •

  Mozilla Public License 2.0

  •6•16•2•1•Updated Mar 11, 2024Mar 11, 2024

• ont_fast5_api

  Public
  Oxford Nanopore Technologies fast5 API software

  Python

  •

  Other

  •30•154•13•1•Updated Feb 27, 2024Feb 27, 2024

• pipeline-umi-amplicon

  Public
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

  Python

  •

  Other

  •14•35•18•3•Updated Feb 27, 2024Feb 27, 2024

• linux-minit-nvidia

  Public
  ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.

  C

  •0•1•0•0•Updated Oct 12, 2023Oct 12, 2023

• u-boot

  Public

  nanoporetech/u-boot’s past year of commit activity
  C

  •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

• linux4.9-minit

  Public

  nanoporetech/linux4.9-minit’s past year of commit activity
  ONT fork of Linux for NVIDIA Tegra based devices

  C

  •

  Other

  •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023