Repositories list

• sra-tools

  Public

  ncbi/sra-tools’s past year of commit activity
  SRA Tools

  C

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  Other

  •276•1.3k•26•12•Updated Mar 12, 2026Mar 12, 2026

• ncbi-cxx-toolkit-public

  Public

  ncbi/ncbi-cxx-toolkit-public’s past year of commit activity
  NCBI C++ Toolkit package sources

  C++

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  Other

  •42•91•3•1•Updated Mar 12, 2026Mar 12, 2026

• tree-tool

  Public

  ncbi/tree-tool’s past year of commit activity
  Incremental building of phylogenetic distance trees

  bioinformaticsevolutionphylogenetic-trees+ 3

  bioinformaticsevolutionphylogenetic-treesdata-analysisdistance-measuresbioinformatics-tool

  HTML

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  Other

  •10•29•0•0•Updated Mar 11, 2026Mar 11, 2026

• ncbi-vdb

  Public

  ncbi/ncbi-vdb’s past year of commit activity
  ncbi-vdb

  C

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  Other

  •43•94•9•1•Updated Mar 11, 2026Mar 11, 2026

• sra-tutorials

  Public

  ncbi/sra-tutorials’s past year of commit activity
  Tutorials and guides for using the Sequence Read Archive

  MIT License

  •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

• ncbi-logging

  Public

  ncbi/ncbi-logging’s past year of commit activity
  Log monitoring and gathering infrastructure to feed analytics

  C++

  •10•12•0•3•Updated Mar 11, 2026Mar 11, 2026

• ngs-tools

  Public

  ncbi/ngs-tools’s past year of commit activity
  C++

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  Other

  •25•109•7•4•Updated Mar 10, 2026Mar 10, 2026

• datasets

  Public

  ncbi/datasets’s past year of commit activity
  NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

  ncbigenomics-data

  ncbigenomics-data

  Jupyter Notebook

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  Other

  •62•515•21•2•Updated Mar 9, 2026Mar 9, 2026

• amr

  Public

  ncbi/amr’s past year of commit activity
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  bioinformaticsgenomicspathogen+ 1

  bioinformaticsgenomicspathogenantibiotic-resistance

  C++

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  Other

  •49•353•10•0•Updated Mar 4, 2026Mar 4, 2026

• ncbi-cxx-toolkit-conan

  Public

  ncbi/ncbi-cxx-toolkit-conan’s past year of commit activity
  NCBI C++ Toolkit package recipe

  Python

  •10•11•0•0•Updated Mar 3, 2026Mar 3, 2026

• GNorm2

  Public

  ncbi/GNorm2’s past year of commit activity
  Java

  •11•26•7•0•Updated Feb 23, 2026Feb 23, 2026

• clinvar

  Public

  ncbi/clinvar’s past year of commit activity
  ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or…

  HTML

  •16•83•4•0•Updated Feb 19, 2026Feb 19, 2026

• ncbi_doc_template

  Public
  CSS

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  The Unlicense

  •6•3•0•0•Updated Feb 11, 2026Feb 11, 2026

• cxx-toolkit

  Public
  HTML

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  The Unlicense

  •51•20•0•0•Updated Feb 11, 2026Feb 11, 2026

• pgap

  Public

  ncbi/pgap’s past year of commit activity
  NCBI Prokaryotic Genome Annotation Pipeline

  Common Workflow Language

  •

  Other

  •94•371•0•0•Updated Feb 9, 2026Feb 9, 2026

• elastic-blast

  Public
  ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

  bioinformaticsblastncbi

  bioinformaticsblastncbi

  Python

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  Other

  •21•67•3•0•Updated Jan 29, 2026Jan 29, 2026

• docker

  Public
  Dockerfile

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  Other

  •34•54•2•0•Updated Jan 22, 2026Jan 22, 2026

• icn3d

  Public

  ncbi/icn3d’s past year of commit activity
  web-based protein structure viewer and analysis tool interactively or in batch mode

  nodejsdelphiwebgl+ 13

  nodejsdelphiwebglvrarjupyter-notebookchemicalproteinsnpnucleotide+ 6

  JavaScript

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  Other

  •53•170•7•2•Updated Jan 21, 2026Jan 21, 2026

• redenovo

  Public

  ncbi/redenovo’s past year of commit activity
  Python

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  MIT License

  •0•1•0•0•Updated Jan 18, 2026Jan 18, 2026

• egapx

  Public
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

  Nextflow

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  Other

  •20•183•14•0•Updated Dec 16, 2025Dec 16, 2025

• stxtyper

  Public
  StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

  bioinformaticsgenomicspathogen+ 3

  bioinformaticsgenomicspathogenescherichia-colibioinformatics-toolvirulence-genes

  C++

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  Other

  •7•17•1•0•Updated Dec 9, 2025Dec 9, 2025

• ncbi-vdb-conan

  Public
  Conan package recipe for NCBI VDB Toolkit

  Python

  •1•0•0•0•Updated Dec 3, 2025Dec 3, 2025

• EvoGeneX

  Public

  ncbi/EvoGeneX’s past year of commit activity
  This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expression data.

  HTML

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  GNU General Public License v3.0

  •6•28•3•0•Updated Dec 1, 2025Dec 1, 2025

• elastic-blast-docs

  Public

  ncbi/elastic-blast-docs’s past year of commit activity
  ElasticBLAST documentation

  Other

  •5•5•0•0•Updated Nov 26, 2025Nov 26, 2025

• SpacePhenotyper

  Public
  Jupyter Notebook

  •0•3•0•0•Updated Nov 24, 2025Nov 24, 2025

• SSDraw

  Public
  JavaScript

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  Other

  •12•87•2•0•Updated Nov 18, 2025Nov 18, 2025

• workshop-sra-hands-on

  Public
  SRA Outreach to the NIH Research Festival and ASHG 2025

  0•2•0•0•Updated Sep 10, 2025Sep 10, 2025

• pubchem-align3d

  Public
  This is a generic C++ library that can be used to rapidly align two small molecules in 3D space, with shape - and optionally color - Tanimoto scoring. Included …

  C++

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  Other

  •4•14•1•0•Updated Sep 3, 2025Sep 3, 2025

• International-Protein-Nomenclature-Guidelines

  Public
  International Protein Nomenclature Guidelines

  7•1•0•0•Updated Aug 20, 2025Aug 20, 2025

• CF-random_software

  Public
  Prediction of alternative conformation and fold-switching proteins with ColabFold

  Python

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  Other

  •2•10•0•0•Updated Aug 19, 2025Aug 19, 2025