Repositories list

• rendeirolab.github.io

  Public
  A simple static website for the Rendeiro lab

  static-siteacademiaacademic-website

  static-siteacademiaacademic-website

  HTML

  •0•0•3•0•Updated Mar 4, 2026Mar 4, 2026

• lab-manual

  Public
  The Rendeiro lab manual

  documentationresearchacademia+ 1

  documentationresearchacademialab-manual

  CSS

  •1•1•0•1•Updated Mar 4, 2026Mar 4, 2026

• LazySlide

  Public
  Accessible and interoperable whole slide image analysis

  deep-learningdigital-pathology

  deep-learningdigital-pathology

  Python

  •

  MIT License

  •12•185•8•0•Updated Feb 28, 2026Feb 28, 2026

• wsidata

  Public
  Efficient data structures and IO for whole slide image analysis

  tissuedeep-learningimage-analysis+ 1

  tissuedeep-learningimage-analysisdigital-pathology

  Python

  •

  MIT License

  •4•20•9•1•Updated Feb 8, 2026Feb 8, 2026

• stainx

  Public
  Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silicon) devices.

  pythoncomputer-visioncuda+ 7

  pythoncomputer-visioncudaimage-processingpytorchmedical-imaginggpu-accelerationmpshistopathologystain-normalization

  Python

  •0•5•2•0•Updated Jan 29, 2026Jan 29, 2026

• lazyslide-tutorials

  Public
  Tutorials for lazyslide in jupyter notebooks

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jan 17, 2026Jan 17, 2026

• github-codeberg-mirror

  Public
  Mirror all repositories from a GitHub organization to Codeberg, preserving visibility settings.

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

• lazyslide-workshop-scverse-conference-2025

  Public
  Jupyter Notebook

  •0•4•0•0•Updated Nov 18, 2025Nov 18, 2025

• histopath-intro

  Public
  A small project as an entry point to working with histopathology data from a deep learning perspective.

  Python

  •0•0•1•0•Updated Oct 29, 2025Oct 29, 2025

• cytomine_utils

  Public
  A package with utilities to interact with Cytomine's API

  Python

  •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

• stain-normalization-gpu

  Public
  A GPU-accelerated stain normalization libarary for histology image processing

  Python

  •3•3•0•0•Updated Sep 24, 2025Sep 24, 2025

• _project_template

  Public template
  A cookiecutter template for projects in the Rendeiro lab

  cookiecuttertemplate-project

  cookiecuttertemplate-project

  Python

  •0•1•1•0•Updated Jul 2, 2025Jul 2, 2025

• dask-cluster

  Public
  Jupyter Notebook

  •0•2•0•0•Updated May 28, 2025May 28, 2025

• lazyslide-benchmark

  Public
  Python

  •0•2•0•0•Updated May 16, 2025May 16, 2025

• LazySlide-website

  Public
  The website for LazySlide

  TypeScript

  •0•0•0•0•Updated May 3, 2025May 3, 2025

• wsi

  Public
  A Python package for the processing of whole slide histopathological images

  pythonpackageopenslide-python+ 1

  pythonpackageopenslide-pythonhistopathology

  Python

  •

  GNU General Public License v3.0

  •0•6•0•0•Updated Feb 19, 2025Feb 19, 2025

• sendpaper-chrome-extension

  Public
  Streamlining the process of sharing papers via email

  chrome-extensionacademiaworkflow-tool

  chrome-extensionacademiaworkflow-tool

  JavaScript

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• LazySlide-nextflow

  Public
  A nextflow workflow using LazySlide for processing whole slide imaging

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024