Steinegger Lab

All

35 repositories

StrucTTY
Public
An Interactive, Terminal-Native Protein Structure Viewer
C++
•
GNU General Public License v3.0
•2•1•0•0•Updated Mar 11, 2026Mar 11, 2026
foldseek-regression
Public
Regression test for foldseek
Shell
•4•3•0•0•Updated Mar 10, 2026Mar 10, 2026
folddisco-upgrade
Public
scripts and datas related to validation and analysis of Folddisco
Python
•0•0•0•0•Updated Mar 10, 2026Mar 10, 2026
foldseek
Public
Foldseek enables fast and sensitive comparisons of large structure sets.
bioinformatics clustering protein-structure
bioinformatics clustering protein-structure alignments
C
•
GNU General Public License v3.0
•145•1.2k•169•7•Updated Mar 10, 2026Mar 10, 2026
build-containers
Public
MIT License
•0•1•0•0•Updated Mar 9, 2026Mar 9, 2026
folddisco
Public
Fast indexing and search of discontinuous motifs in protein structures
bioinformatics protein-structure motif
bioinformatics protein-structure motif foldseek
Rust
•
GNU General Public License v3.0
•14•126•16•0•Updated Feb 24, 2026Feb 24, 2026
foldcomp
Public
Compressing protein structures effectively with torsion angles
bioinformatics compression protein-structure
bioinformatics compression protein-structure
C++
•
MIT License
•21•188•29•0•Updated Feb 10, 2026Feb 10, 2026
foldmason
Public
Multiple Protein Structure Alignment at Scale with FoldMason
bioinformatics protein-structure msa
bioinformatics protein-structure msa
C
•
GNU General Public License v3.0
•27•258•25•0•Updated Jan 31, 2026Jan 31, 2026
afesm-clusters-web
Public
Vue
•
GNU General Public License v3.0
•3•2•0•0•Updated Jan 7, 2026Jan 7, 2026
Metabuli
Public
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
bioinformatics taxonomy metagenomics
bioinformatics taxonomy metagenomics k-mer taxonomic-classification
C++
•
GNU General Public License v3.0
•15•167•35•1•Updated Jan 2, 2026Jan 2, 2026
Metabuli-App
Public
Vue
•
GNU General Public License v3.0
•3•36•1•0•Updated Dec 22, 2025Dec 22, 2025
alphafold
Public
Open source code for AlphaFold.
Python
•
Apache License 2.0
•2.6k•12•0•2•Updated Nov 15, 2025Nov 15, 2025
unicore
Public
Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
bioinformatics protein-structure phylogenetics
bioinformatics protein-structure phylogenetics
Rust
•
GNU General Public License v3.0
•10•85•4•0•Updated Nov 13, 2025Nov 13, 2025
Metabuli-regression
Public
Regression tests for Metabuli
Shell
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 13, 2025Nov 13, 2025
foldmason-analysis
Public
R
•0•2•1•0•Updated Oct 10, 2025Oct 10, 2025
afesm-analysis
Public
Jupyter Notebook
•2•3•0•0•Updated Sep 4, 2025Sep 4, 2025
folddisco-analysis
Public
Scripts to benchmark folddisco
R
•0•2•0•0•Updated Aug 19, 2025Aug 19, 2025
ufcg
Public
UFCG: Universal Fungal Core Genes
bioinformatics genomics phylogenetics
bioinformatics genomics phylogenetics fungi marker-gene-analysis
Java
•
GNU General Public License v3.0
•0•35•21•0•Updated Jul 29, 2025Jul 29, 2025
taxoview
Public
A Vue.js plugin for generating interactive Sankey diagrams using Kraken report data
visualization bioinformatics vue
visualization bioinformatics vue taxonomy sankey taxonomic-classification
Vue
•
GNU General Public License v3.0
•3•10•1•1•Updated Jul 22, 2025Jul 22, 2025
mmseqs2-gpu-analysis
Public
Shell
•
MIT License
•2•20•0•0•Updated May 14, 2025May 14, 2025
probeit
Public
Design capture probes
Python
•
GNU General Public License v3.0
•2•10•0•0•Updated Apr 28, 2025Apr 28, 2025
SeekRank
Public
Rank homologous protein sequences based on a regressor trained on experimental measures
Jupyter Notebook
•
MIT License
•1•10•0•0•Updated Apr 11, 2025Apr 11, 2025
afdb-clusters-web
Public
Jupyter Notebook
•
GNU General Public License v3.0
•3•4•1•0•Updated Mar 29, 2025Mar 29, 2025
foldseek-multimer-analysis
Public
Shell
•2•7•0•0•Updated Feb 1, 2025Feb 1, 2025
bfvd-analysis
Public
Big Fantastic Virus Database (BFVD): Code used for analyses
Shell
•0•2•1•0•Updated Dec 16, 2024Dec 16, 2024
colabfold-protocol
Public
ColabFold protocol
Jupyter Notebook
•8•57•2•0•Updated Oct 17, 2024Oct 17, 2024
ufcg-web
Public
UFCG website
HTML
•
GNU General Public License v3.0
•0•1•0•0•Updated Jul 2, 2024Jul 2, 2024
foldseek-analysis
Public
Scripts to benchmark and train foldseek
Jupyter Notebook
•5•40•9•1•Updated May 22, 2024May 22, 2024
petasearch
Public
🧬 Efficient parallelized peta-scale protein database search
C
•
GNU General Public License v3.0
•0•40•5•0•Updated Jan 4, 2024Jan 4, 2024
petasearch-regression
Public
C++
•0•0•0•0•Updated Jan 4, 2024Jan 4, 2024