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OMP results are corrupted when crashing partway through

bugSomething isn't workingSomething isn't working

ompOmp stage of the pipelineOmp stage of the pipeline

Status: Open.

#425 In paulshuker/coppafisher;

· paulshuker opened on Mar 2, 2026

Optimise optical flow upsampling using pytorch

optimisationSpeed upSpeed up

registerRegister stage of the pipelineRegister stage of the pipeline

Status: Open.

#423 In paulshuker/coppafisher;

· paulshuker opened on Feb 26, 2026

Wiener deconvolution is optional

enhancementNew feature or requestNew feature or request

filterFilter stage of the pipelineFilter stage of the pipeline

Status: Open.

#420 In paulshuker/coppafisher;

· paulshuker opened on Feb 2, 2026

Highlight gene/cell type the mouse is over in Viewer gene legend

diagnosticsUsed for debugging resultsUsed for debugging results

enhancementNew feature or requestNew feature or request

Status: Open.

#414 In paulshuker/coppafisher;

· paulshuker opened on Dec 16, 2025

Auto thresholds for each channel separately

enhancementNew feature or requestNew feature or request

find spotsFind spots stage of the pipelineFind spots stage of the pipeline

Status: Open.

#410 In paulshuker/coppafisher;

· paulshuker opened on Dec 8, 2025

Discriminality scoring option for Viewer spots

diagnosticsUsed for debugging resultsUsed for debugging results

enhancementNew feature or requestNew feature or request

Status: Open.

#408 In paulshuker/coppafisher;

· paulshuker opened on Dec 1, 2025

2d input support

enhancementNew feature or requestNew feature or request

Status: Open.

#403 In paulshuker/coppafisher;

· paulshuker opened on Nov 17, 2025

·  

Version 2

Delete redundant notebook variables

Status: Open.

#375 In paulshuker/coppafisher;

· paulshuker opened on Sep 8, 2025

·  

Version 2

Tile indexing rework

enhancementNew feature or requestNew feature or request

extractExtract stage of the pipelineExtract stage of the pipeline

Status: Open.

#374 In paulshuker/coppafisher;

· paulshuker opened on Sep 8, 2025

·  

Version 2

Improved filter PSF

Status: Open.

#369 In paulshuker/coppafisher;

· paulshuker opened on Sep 1, 2025

Fix pytest-cov code coverage

bugSomething isn't workingSomething isn't working

Status: Open.

#366 In paulshuker/coppafisher;

· paulshuker opened on Aug 14, 2025

In depth look at registration

registerRegister stage of the pipelineRegister stage of the pipeline

Status: Open.

#354 In paulshuker/coppafisher;

· paulshuker opened on Jul 25, 2025