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@davidlougheed
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Updates to libdeflate have fixed bugs, added more CPU support, and increased performance (see e.g. https://github.com/ebiggers/libdeflate/blob/master/NEWS.md#version-114 ). Personally, I use rust-htslib in a context where BAM read/decompression speed is a major performance factor, so having the ~20-30% performance increase from at least v1.14 would be quite useful.

Closes #15.

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davidlougheed commented Sep 26, 2024

cc @johanneskoester - any way I can help test this? perhaps I should fork rust-htslib and try this out there too

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The tests should run automatically. The didn't so far, let me check whats wrong here.

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Ok, found the problem.

@johanneskoester johanneskoester merged commit a1acbb1 into rust-bio:main Dec 2, 2024
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Update libdeflate-sys to 1.20.0.

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