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scverse / spatialdata-io Public

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Chunkwise image loader#279

Open

lucas-diedrich wants to merge 28 commits intoscverse:mainscverse/spatialdata-io:mainfrom

lucas-diedrich:image-reader-chunkwiselucas-diedrich/spatialdata-io:image-reader-chunkwiseCopy head branch name to clipboard

Conversation Commits28 (28)Checks Files changed

Open

Chunkwise image loader#279
lucas-diedrich wants to merge 28 commits intoscverse:mainfrom
lucas-diedrich:image-reader-chunkwise

Commits

Commits on Feb 16, 2025

feature: Initial lazy tiff reader
lucas-diedrich
committed
Updated comments
lucas-diedrich
committed
Updated comments
lucas-diedrich
committed
Move utility functions to designated submodule readers._utils._image
lucas-diedrich
committed
Initial tests utils
lucas-diedrich
committed
Fixes edge cases for min coordinate
lucas-diedrich
committed
Added test for negative coordinates
lucas-diedrich
committed

Commits on Feb 17, 2025

Add support for png/jpg again
lucas-diedrich
committed
Add initial test
lucas-diedrich
committed
Fix: Fix jpeg and png reader, fix issues with local variable name
lucas-diedrich
committed
Merge branch 'main' of https://github.com/scverse/spatialdata-io into image-reader-chunkwise
lucas-diedrich
committed

Commits on May 2, 2025

Update src/spatialdata_io/readers/_utils/_image.py

lucas-diedrich
and
melonora
authored
[Refactor|API] Rename dimensions to shape to stick to numpy convention
lucas-diedrich
committed
[Refactor] Make suggested simplification of code, suggested by @melonora
lucas-diedrich
committed
[Test] Add test for compressed tiffs
lucas-diedrich
committed
[Fix] Account for compressed images
lucas-diedrich
committed
[Refactor] Remove unnecessary type hint
lucas-diedrich
committed

Commits on Jan 12, 2026

Merge branch 'main' into image-reader-chunkwise
LucaMarconato
committed
fix pre-commit
LucaMarconato
committed

Commits on Jan 13, 2026

fix transpose in image(); wip code review
LucaMarconato
committed
add test for dask-image fallback for compressed tiffs
LucaMarconato
committed
remove unused min_coordinate
LucaMarconato
committed
fix wrong dimension _compute_chunks(); cover with test
LucaMarconato
committed
np._int -> np.number
LucaMarconato
committed
fix indices in _read_chunks()
LucaMarconato
committed
better english
LucaMarconato
committed
better docstring
LucaMarconato
committed
wip benchmark (bugs)
LucaMarconato
committed

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