Skip to content

Conversation

anandkaranubc
Copy link
Contributor

@anandkaranubc anandkaranubc commented Feb 18, 2025

Progresses towards resolving #168

Description

What is the purpose of this pull request?

This pull request:

  • Adds the JS implementation of the median of a Bradford distribution.

Related Issues

Does this pull request have any related issues?

This pull request:

Questions

Any questions for reviewers of this pull request?

No.

Other

Any other information relevant to this pull request? This may include screenshots, references, and/or implementation notes.

No.

Checklist

Please ensure the following tasks are completed before submitting this pull request.


@stdlib-js/reviewers

---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: passed
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: passed
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: passed
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: passed
  - task: lint_repl_help
    status: passed
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: passed
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: passed
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: passed
  - task: lint_typescript_tests
    status: passed
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
@stdlib-bot stdlib-bot added Statistics Issue or pull request related to statistical functionality. Needs Review A pull request which needs code review. labels Feb 18, 2025
@stdlib-bot
Copy link
Contributor

stdlib-bot commented Feb 18, 2025

Coverage Report

Package Statements Branches Functions Lines
stats/base/dists/bradford/median $\color{green}115/115$
$\color{green}+100.00\%$
$\color{green}6/6$
$\color{green}+100.00\%$
$\color{green}1/1$
$\color{green}+100.00\%$
$\color{green}115/115$
$\color{green}+100.00\%$

The above coverage report was generated for the changes in this PR.

t.equal( y, expected[i], 'c: '+c[i]+', y: '+y+', expected: '+expected[i] );
} else {
delta = abs( y - expected[ i ] );
tol = 7.2 * EPS * abs( expected[ i ] );
Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Similar comment to the mean implementation:

The tolerance had to be slightly increased due to differences in the sqrt( 1 + c ) calculations when c was close to 0 while testing it against SciPy-generated test fixtures.

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is more noticeable when c is close to 0.

In our case, specifically when c = 0.1

@anandkaranubc
Copy link
Contributor Author

FYI, the formula for the median was derived using the formula of the CDF of the Bradford distribution and equating it to 0.5:

$$F(m_d; c) = 0.5$$

where

$$F(x; c) = \frac{\ln(1 + c x)}{\ln(1 + c)}$$

which gives:

$$m_d = \frac{\sqrt{1 + c} - 1}{c}$$

or in exact terms:

$$m_d = \frac{\log(0.5 * \exp(1+c)) - 1}{c}$$

I used both of the above formulas to check if they reduce the tolerance. There was no difference, and the second one is also very computationally expensive.

---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: passed
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: passed
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
@anandkaranubc anandkaranubc marked this pull request as draft February 19, 2025 09:28
@stdlib-bot stdlib-bot removed the Needs Review A pull request which needs code review. label Feb 19, 2025
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: passed
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: passed
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
@anandkaranubc anandkaranubc marked this pull request as ready for review February 19, 2025 10:38
@stdlib-bot stdlib-bot added the Needs Review A pull request which needs code review. label Feb 19, 2025
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: passed
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: passed
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: passed
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
Planeshifter
Planeshifter previously approved these changes Feb 21, 2025
Copy link
Member

@Planeshifter Planeshifter left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

One small edit, otherwise all good!

Signed-off-by: Philipp Burckhardt <[email protected]>
@Planeshifter Planeshifter added the Ready To Merge A pull request which is ready to be merged. label Feb 21, 2025
@stdlib-bot stdlib-bot removed the Needs Review A pull request which needs code review. label Feb 21, 2025
@anandkaranubc
Copy link
Contributor Author

anandkaranubc commented Feb 21, 2025

One small edit, otherwise all good!

Thanks @Planeshifter. I will make the same change to other PRs too (right away).

@stdlib-bot
Copy link
Contributor

PR Commit Message

feat: add `stats/base/dists/bradford/median`

PR-URL: https://github.com/stdlib-js/stdlib/pull/5275

Co-authored-by: Karan Anand <[email protected]>
Co-authored-by: Philipp Burckhardt <[email protected]>
Signed-off-by: Philipp Burckhardt <[email protected]>

Please review the above commit message and make any necessary adjustments.

@Planeshifter Planeshifter merged commit 996c248 into stdlib-js:develop Feb 21, 2025
28 checks passed
@anandkaranubc anandkaranubc deleted the bradford/median branch May 10, 2025 14:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Ready To Merge A pull request which is ready to be merged. Statistics Issue or pull request related to statistical functionality.

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants