Reorganize src/ structure: group bootstrap concerns and move network utilities to testing

docs/codebase-architecture.md

@@ -189,11 +189,19 @@ All modules include comprehensive `//!` documentation with:
 
 ### Core Infrastructure
 
+**Bootstrap Module:**
+
+Application initialization and lifecycle management:
+
+- ✅ `src/bootstrap/mod.rs` - Bootstrap module root with re-exports
+- ✅ `src/bootstrap/app.rs` - Main application bootstrap and entry point logic
+- ✅ `src/bootstrap/container.rs` - Dependency injection container (Services)
+- ✅ `src/bootstrap/help.rs` - Help and usage information display
+- ✅ `src/bootstrap/logging.rs` - Logging configuration and utilities
+
 **Root Level Files:**
 
 - ✅ `src/main.rs` - Main binary entry point
-- ✅ `src/container.rs` - Dependency injection container
-- ✅ `src/logging.rs` - Logging configuration and utilities
 - ✅ `src/lib.rs` - Library root module
 
 **Binary Files:**
@@ -359,20 +367,28 @@ Generic utilities used across all layers:
 - ✅ `src/shared/command/mod.rs` - Command execution utilities (used by all adapters)
 - ✅ `src/shared/clock.rs` - Time abstraction for deterministic testing
 - ✅ `src/shared/error/mod.rs` - Shared error types
-- ✅ `src/shared/port_checker.rs` - Network port checking
-- ✅ `src/shared/port_usage_checker.rs` - Port usage validation
 - ✅ `src/shared/username.rs` - Username value object
 
-Note: SSH and Docker adapters have been moved to `src/adapters/`
+Note: SSH and Docker adapters have been moved to `src/adapters/`. Network testing utilities (port_checker, port_usage_checker) have been moved to `src/testing/network/`.
 
 ### Testing Infrastructure
 
 **E2E Testing Framework:**
 
-- ✅ `src/e2e/mod.rs` - E2E testing framework coordination
-- ✅ `src/e2e/containers/mod.rs` - Container-based testing infrastructure
-- ✅ `src/e2e/containers/actions/` - E2E test actions
-- ✅ `src/e2e/containers/provisioned.rs` - Provisioned container management
+- ✅ `src/testing/mod.rs` - Testing framework root module
+- ✅ `src/testing/e2e/mod.rs` - E2E testing framework coordination
+- ✅ `src/testing/e2e/containers/mod.rs` - Container-based testing infrastructure
+- ✅ `src/testing/e2e/containers/actions/` - E2E test actions
+- ✅ `src/testing/e2e/containers/provisioned.rs` - Provisioned container management
+- ✅ `src/testing/integration/` - Integration testing utilities
+- ✅ `src/testing/fixtures.rs` - Reusable test fixtures
+- ✅ `src/testing/mock_clock.rs` - Mock clock implementation for deterministic testing
+
+**Network Testing Utilities:**
+
+- ✅ `src/testing/network/mod.rs` - Network testing utilities root
+- ✅ `src/testing/network/port_checker.rs` - TCP port connectivity checking
+- ✅ `src/testing/network/port_usage_checker.rs` - Port usage validation and process identification
 
 **Configuration:**
 

src/bin/e2e_config_tests.rs

@@ -65,8 +65,8 @@ use torrust_tracker_deployer_lib::testing::e2e::tasks::run_configure_command::ru
 use tracing::{error, info};
 
 use torrust_tracker_deployer_lib::adapters::ssh::{SshCredentials, DEFAULT_SSH_PORT};
+use torrust_tracker_deployer_lib::bootstrap::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::domain::{Environment, EnvironmentName};
-use torrust_tracker_deployer_lib::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::shared::Username;
 use torrust_tracker_deployer_lib::testing::e2e::context::{TestContext, TestContextType};
 use torrust_tracker_deployer_lib::testing::e2e::tasks::{

src/bin/e2e_provision_and_destroy_tests.rs

@@ -54,8 +54,8 @@ use tracing::{error, info};
 
 // Import E2E testing infrastructure
 use torrust_tracker_deployer_lib::adapters::ssh::{SshCredentials, DEFAULT_SSH_PORT};
+use torrust_tracker_deployer_lib::bootstrap::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::domain::{Environment, EnvironmentName};
-use torrust_tracker_deployer_lib::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::shared::Username;
 use torrust_tracker_deployer_lib::testing::e2e::context::{TestContext, TestContextType};
 use torrust_tracker_deployer_lib::testing::e2e::tasks::virtual_machine::{

src/bin/e2e_tests_full.rs

@@ -61,8 +61,8 @@ use tracing::{error, info};
 
 // Import E2E testing infrastructure
 use torrust_tracker_deployer_lib::adapters::ssh::DEFAULT_SSH_PORT;
+use torrust_tracker_deployer_lib::bootstrap::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::infrastructure::persistence::repository_factory::RepositoryFactory;
-use torrust_tracker_deployer_lib::logging::{LogFormat, LogOutput, LoggingBuilder};
 use torrust_tracker_deployer_lib::shared::{Clock, SystemClock};
 use torrust_tracker_deployer_lib::testing::e2e::context::{TestContext, TestContextType};
 use torrust_tracker_deployer_lib::testing::e2e::tasks::{

src/bin/test_logging.rs

@@ -31,7 +31,7 @@
 use std::path::PathBuf;
 
 use clap::Parser;
-use torrust_tracker_deployer_lib::logging::{LogFormat, LogOutput, LoggingBuilder};
+use torrust_tracker_deployer_lib::bootstrap::logging::{LogFormat, LogOutput, LoggingBuilder};
 use tracing::{debug, error, info, trace, warn};
 
 #[derive(Parser)]

src/app.rs → src/bootstrap/app.rs

@@ -20,7 +20,7 @@
 use clap::Parser;
 use tracing::info;
 
-use torrust_tracker_deployer_lib::{help, logging, presentation};
+use crate::{bootstrap, presentation};
 
 /// Main application entry point
 ///
@@ -42,7 +42,7 @@ pub fn run() {
 
     let logging_config = cli.global.logging_config();
 
-    logging::init_subscriber(logging_config);
+    bootstrap::logging::init_subscriber(logging_config);
 
     info!(
         app = "torrust-tracker-deployer",
@@ -62,7 +62,7 @@ pub fn run() {
             }
         }
         None => {
-            help::display_getting_started();
+            bootstrap::help::display_getting_started();
         }
     }
 

src/bootstrap/mod.rs

@@ -0,0 +1,21 @@
+//! Bootstrap Module
+//!
+//! This module contains application initialization and bootstrap concerns.
+//! It handles application lifecycle, dependency injection, logging setup,
+//! and help display.
+//!
+//! ## Modules
+//!
+//! - `app` - Main application bootstrap and entry point logic
+//! - `container` - Service container for dependency injection
+//! - `help` - Help and usage information display
+//! - `logging` - Logging configuration and initialization
+
+pub mod app;
+pub mod container;
+pub mod help;
+pub mod logging;
+
+// Re-export commonly used types for convenience
+pub use container::Services;
+pub use logging::{LogFormat, LogOutput, LoggingBuilder, LoggingConfig};

src/config/mod.rs

@@ -25,7 +25,7 @@ use std::path::PathBuf;
 /// Centralizes all deployment-related configuration including file paths,
 /// service connection details, and runtime behavior settings.
 ///
-/// Created once at deployment start and passed to [`Services::new()`](crate::container::Services::new).
+/// Created once at deployment start and passed to [`Services::new()`](crate::bootstrap::container::Services::new).
 pub struct Config {
     /// Directory containing template files for rendering configurations.
     ///

src/lib.rs

@@ -20,21 +20,17 @@
 //!
 //! ## Other Modules
 //! - `adapters` - External tool adapters (thin CLI wrappers)
+//! - `bootstrap` - Application initialization and bootstrap concerns
 //! - `config` - Configuration management for deployment environments
-//! - `container` - Service container for dependency injection
-//! - `help` - Help and usage information display functions
-//! - `logging` - Logging configuration and utilities
 //! - `shared` - Shared modules used across different layers
 //! - `testing` - Testing utilities (unit, integration, and end-to-end)
 
 pub mod adapters;
 pub mod application;
+pub mod bootstrap;
 pub mod config;
-pub mod container;
 pub mod domain;
-pub mod help;
 pub mod infrastructure;
-pub mod logging;
 pub mod presentation;
 pub mod shared;
 pub mod testing;

src/main.rs

@@ -1,10 +1,10 @@
 //! Main binary entry point for Torrust Tracker Deployer.
 //!
 //! This binary provides the main CLI interface for the deployment infrastructure.
-//! All application logic is contained in the `app` module.
+//! All application logic is contained in the `bootstrap::app` module.
 
-mod app;
+use torrust_tracker_deployer_lib::bootstrap;
 
 fn main() {
-    app::run();
+    bootstrap::app::run();
 }

src/presentation/cli/args.rs

@@ -6,7 +6,7 @@
 
 use std::path::PathBuf;
 
-use crate::logging::{LogFormat, LogOutput, LoggingConfig};
+use crate::bootstrap::logging::{LogFormat, LogOutput, LoggingConfig};
 
 /// Global CLI arguments for logging configuration
 ///

src/shared/mod.rs

@@ -7,14 +7,10 @@
 pub mod clock;
 pub mod command;
 pub mod error;
-pub mod port_checker;
-pub mod port_usage_checker;
 pub mod username;
 
 // Re-export commonly used types for convenience
 pub use clock::{Clock, SystemClock};
 pub use command::{CommandError, CommandExecutor, CommandResult};
 pub use error::{ErrorKind, Traceable};
-pub use port_checker::{PortChecker, PortCheckerError};
-pub use port_usage_checker::{PortUsageChecker, PortUsageError};
 pub use username::{Username, UsernameError};

src/testing/e2e/containers/actions/ssh_wait.rs

@@ -33,7 +33,7 @@ use std::time::{Duration, Instant};
 use tracing::{debug, info, warn};
 
 use crate::adapters::ssh::SshServiceChecker;
-use crate::shared::PortChecker;
+use crate::testing::network::PortChecker;
 
 /// Specific error types for SSH wait operations
 #[derive(Debug, thiserror::Error)]

src/testing/e2e/context.rs

@@ -23,8 +23,8 @@
 use tempfile::TempDir;
 use tracing::{info, warn};
 
+use crate::bootstrap::container::Services;
 use crate::config::Config;
-use crate::container::Services;
 use crate::domain::environment::state::AnyEnvironmentState;
 use crate::domain::Environment;
 use crate::infrastructure::external_tools::tofu::OPENTOFU_SUBFOLDER;

src/testing/e2e/tasks/container/run_provision_simulation.rs

@@ -25,7 +25,7 @@ use tracing::info;
 
 use crate::adapters::ssh::SshCredentials;
 use crate::application::steps::RenderAnsibleTemplatesStep;
-use crate::container::Services;
+use crate::bootstrap::container::Services;
 use crate::infrastructure::external_tools::ansible::AnsibleTemplateRenderer;
 use crate::testing::e2e::containers::actions::{SshKeySetupAction, SshWaitAction};
 use crate::testing::e2e::containers::timeout::ContainerTimeouts;

src/testing/integration/ssh_server/debug.rs

@@ -3,7 +3,7 @@
 use std::sync::Arc;
 
 use crate::adapters::docker::DockerClient;
-use crate::shared::port_usage_checker::PortUsageChecker;
+use crate::testing::network::PortUsageChecker;
 
 // Import constants only for the convenience function
 use super::constants::{SSH_SERVER_IMAGE_NAME, SSH_SERVER_IMAGE_TAG};

src/testing/mod.rs

@@ -9,14 +9,17 @@
 //! - `integration` - Integration testing utilities
 //! - `fixtures` - Reusable test fixtures
 //! - `mock_clock` - Mock clock implementation for deterministic time testing
+//! - `network` - Network testing utilities (port checking, connectivity testing)
 
 pub mod e2e;
 pub mod fixtures;
 pub mod integration;
 pub mod mock_clock;
+pub mod network;
 
 // Re-export commonly used testing types
 pub use mock_clock::MockClock;
+pub use network::{PortChecker, PortCheckerError, PortUsageChecker, PortUsageError};
 
 // Re-export E2E types for convenience
 pub use e2e::{

src/testing/network/mod.rs

@@ -0,0 +1,17 @@
+//! Network Testing Utilities
+//!
+//! This module provides network-related testing utilities for checking port
+//! connectivity and port usage. These utilities are used exclusively in tests
+//! to verify network connectivity and diagnose port conflicts.
+//!
+//! ## Modules
+//!
+//! - `port_checker` - TCP port connectivity checking
+//! - `port_usage_checker` - Port usage and process identification
+
+pub mod port_checker;
+pub mod port_usage_checker;
+
+// Re-export commonly used types for convenience
+pub use port_checker::{PortChecker, PortCheckerError};
+pub use port_usage_checker::{PortUsageChecker, PortUsageError};

src/shared/port_checker.rs → src/testing/network/port_checker.rs

@@ -16,7 +16,7 @@
 //! ```rust,no_run
 //! use std::net::{SocketAddr, IpAddr, Ipv4Addr};
 //! use std::time::Duration;
-//! use torrust_tracker_deployer_lib::shared::PortChecker;
+//! use torrust_tracker_deployer_lib::testing::network::PortChecker;
 //!
 //! # fn main() -> Result<(), Box<dyn std::error::Error>> {
 //! let checker = PortChecker::new();

src/shared/port_usage_checker.rs → src/testing/network/port_usage_checker.rs

@@ -3,7 +3,7 @@
 //! This module provides functionality to check which processes are using specific ports
 //! on the system. It uses system commands like `netstat` or `ss` to query port usage.
 //!
-//! This is different from [`crate::shared::port_checker`] which checks TCP connectivity
+//! This is different from [`crate::testing::network::port_checker`] which checks TCP connectivity
 //! to a port. This module checks which process is actually bound to a port.
 
 use thiserror::Error;
@@ -22,7 +22,7 @@ use crate::adapters::network::{NetstatClient, NetworkError, SsClient};
 /// # Example
 ///
 /// ```rust,no_run
-/// use torrust_tracker_deployer_lib::shared::port_usage_checker::PortUsageChecker;
+/// use torrust_tracker_deployer_lib::testing::network::PortUsageChecker;
 ///
 /// // Check if port 22 is in use
 /// match PortUsageChecker::check_port(22) {
@@ -61,7 +61,7 @@ impl PortUsageChecker {
     /// # Example
     ///
     /// ```rust,no_run
-    /// use torrust_tracker_deployer_lib::shared::port_usage_checker::PortUsageChecker;
+    /// use torrust_tracker_deployer_lib::testing::network::PortUsageChecker;
     ///
     /// match PortUsageChecker::check_port(8080) {
     ///     Ok(lines) => {
@@ -217,7 +217,7 @@ impl PortUsageError {
     /// # Example
     ///
     /// ```rust,no_run
-    /// use torrust_tracker_deployer_lib::shared::port_usage_checker::PortUsageChecker;
+    /// use torrust_tracker_deployer_lib::testing::network::PortUsageChecker;
     ///
     /// if let Err(e) = PortUsageChecker::check_port(8080) {
     ///     eprintln!("Error: {e}");

tests/logging_integration.rs

@@ -17,7 +17,7 @@ use std::fs;
 use std::path::PathBuf;
 use std::process::Command;
 use tempfile::TempDir;
-use torrust_tracker_deployer_lib::logging::LOG_FILE_NAME;
+use torrust_tracker_deployer_lib::bootstrap::logging::LOG_FILE_NAME;
 
 /// Helper struct to manage test execution and cleanup
 struct LoggingTest {