Repositories list

• KomaMRI.jl

  Public
  Koma is a GPU-accelerated, Pulseq-compatible framework for simulating Magnetic Resonance Imaging (MRI) acquisitions. The primary focus of this package is to sim…

  simulationmrigpu-acceleration+ 3

  simulationmrigpu-accelerationdiffusiondiffusion-mricardiac

  Julia

  •

  MIT License

  •4747 forks•215215 stars•7373 issues•1515 pull requests•Updated Aug 18, 2026Aug 18, 2026

• MedEye3d.jl

  Public
  Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PE…

  open-sourceopengljulia-language+ 3

  open-sourceopengljulia-languagemedical-imagingsegmentationnuclear-medicine

  Jupyter Notebook

  •

  Apache License 2.0

  •22 forks•1616 stars•1616 issues•11 pull request•Updated Aug 18, 2026Aug 18, 2026

• JuliaHealthAudit

  Public
  Reproducible audit of JuliaHealth repositories focusing on documentation, CI and maintenance.

  Julia

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Aug 17, 2026Aug 17, 2026

• JuliaLifeSciences

  Public
  A website aggregating resources for using Julia in the life sciences.

  TypeScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 16, 2026Aug 16, 2026

• MRISequenceBuildingBlocks.jl

  Public
  This package provides efficient pulse-programming patterns for developing MRI pulse sequences that can be exported in the Pulseq format.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• JuliaHealth2026BountyProgram

  Public
  NumFOCUS-sponsored JuliaHealth bounty program.

  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• Thunderbolt.jl

  Public
  A modular shared-memory high-performance framework for multiscale cardiac multiphysics simulations.

  hpcelectrophysiologycardiac-dynamics+ 5

  hpcelectrophysiologycardiac-dynamicsfsiscientific-softwaremultiphysics-simulationelectromechanicscomputational-cardiology

  Julia

  •

  MIT License

  •66 forks•2626 stars•5555 issues•44 pull requests•Updated Aug 10, 2026Aug 10, 2026

• komamripy

  Public
  Pulseq-compatible, high-performance MRI simulations in Python.

  Python

  •

  MIT License

  •11 fork•88 stars•11 issue•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• MedImages.jl

  Public
  Upstream package that provides an interface to the ITK I/O functions in Julia and a bunch of medical imaging analysis workflows

  TeX

  •

  Apache License 2.0

  •66 forks•99 stars•44 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• NeuroAnalyzer.jl

  Public
  Julia toolbox for analyzing neurophysiological data

  julianeurosciencemeg+ 11

  julianeurosciencemegeegpsychologytmsbrainnirsecogtacs+ 4

  Julia

  •

  BSD 2-Clause "Simplified" License

  •55 forks•2121 stars•11 issue•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• BloodFlowTrixi.jl

  Public
  This package implements 1D and 2D blood flow models for arterial circulation using Trixi.jl, enabling efficient numerical simulation and analysis.

  Julia

  •

  MIT License

  •11 fork•4343 stars•22 issues•44 pull requests•Updated Aug 1, 2026Aug 1, 2026

• juliahealth.github.io

  Public
  The official JuliaHealth website -- powered by Quarto, made with love.

  blogmachine-learningresearch+ 6

  blogmachine-learningresearchjuliahealthmedical-imagingcensusquartoobservational-health

  TeX

  •88 forks•66 stars•1111 issues•22 pull requests•Updated Aug 1, 2026Aug 1, 2026

• HealthLLM.jl

  Public
  Julia

  •

  MIT License

  •11 fork•33 stars•1212 issues•2020 pull requests•Updated Jul 19, 2026Jul 19, 2026

• HealthDash.jl

  Public
  Julia

  •

  MIT License

  •00 forks•33 stars•11 issue•00 pull requests•Updated Jul 7, 2026Jul 7, 2026

• JuliaHealthLLM

  Public
  Prototype JuliaHealth LLM project

  HTML

  •

  MIT License

  •00 forks•55 stars•33 issues•3636 pull requests•Updated Jul 4, 2026Jul 4, 2026

• Pulseq.jl

  Public
  Pulseq in Julia.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• PubChemCrawler.jl

  Public
  Utilities to programmatically query the PubChem database

  xmlrest-apipubchem-database

  xmlrest-apipubchem-database

  Julia

  •

  MIT License

  •88 forks•2828 stars•11 issue•22 pull requests•Updated Jun 26, 2026Jun 26, 2026

• BlindingIndex.jl

  Public
  Compute James (1996) and Bang (2004) Blinding Indices

  Julia

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 23, 2026Jun 23, 2026

• IPUMS.jl

  Public
  A convenience package to work with IPUMS data

  Julia

  •

  MIT License

  •33 forks•33 stars•88 issues•55 pull requests•Updated Jun 22, 2026Jun 22, 2026

• CloToP.jl

  Public
  Clozapine Toxicity Predictor

  HTML

  •

  BSD 2-Clause "Simplified" License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 6, 2026Jun 6, 2026

• JuliaHealthZoo

  Public
  An example zoo of various health research workflows using Julia and JuliaHealth tools.

  Julia

  •

  MIT License

  •00 forks•11 star•33 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• MedPipe3D.jl

  Public
  Julia

  •

  MIT License

  •44 forks•88 stars•1717 issues•11 pull request•Updated Mar 19, 2026Mar 19, 2026

• JuliaHealthEcosystemPaper

  Public
  JuliaCon Proceedings Paper about the JuliaHealth Ecosystem

  TeX

  •

  MIT License

  •11 fork•33 stars•00 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• OMOPCDMFeasibility.jl

  Public
  Feasibility analysis tools for OMOP CDM cohorts in Julia.

  Julia

  •

  MIT License

  •00 forks•55 stars•00 issues•44 pull requests•Updated Feb 24, 2026Feb 24, 2026

• OMOPCommonDataModel.jl

  Public
  Pure Julia implementation of the OMOP Common Data Model (CDM)

  juliajulia-languageohdsi+ 3

  juliajulia-languageohdsicdmomopcommon-data-model

  Julia

  •

  MIT License

  •33 forks•66 stars•44 issues•22 pull requests•Updated Feb 5, 2026Feb 5, 2026

• SMARTBackendServices.jl

  Public
  Server-to-server FHIR connections

  Julia

  •

  MIT License

  •11 fork•00 stars•00 issues•11 pull request•Updated Dec 1, 2025Dec 1, 2025

• HealthSampleData.jl

  Public
  Sample health data for a variety of health formats and use cases

  Julia

  •

  MIT License

  •22 forks•22 stars•77 issues•33 pull requests•Updated Nov 24, 2025Nov 24, 2025

• HealthBase.jl

  Public
  Common namespace for functions and interfaces in the JuliaHealth ecosystem

  Julia

  •

  MIT License

  •33 forks•77 stars•11 issue•22 pull requests•Updated Aug 28, 2025Aug 28, 2025

• OHDSIAPI.jl

  Public
  A Julia interface to a variety of OHDSI web or API-based services

  JavaScript

  •

  MIT License

  •22 forks•22 stars•00 issues•44 pull requests•Updated Aug 21, 2025Aug 21, 2025

• MedEval3D.jl

  Public
  Set of CUDA accelerated medical segmentation metrics.

  medicinecomputer-visionmetrics+ 1

  medicinecomputer-visionmetricssegmentation

  Julia

  •

  MIT License

  •44 forks•44 stars•33 issues•33 pull requests•Updated Aug 2, 2025Aug 2, 2025