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Distance_Between_Minima_Tool

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Volker edited this page May 15, 2020 · 3 revisions

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The tool measures the mean distance between the minima in the profile plot.

Getting Started

To install the tool save the file Distance_Between_Minima_Tool.ijm under macros/toolsets in your FIJI installation.

Select the Distance_Between_Minima_Tool from the >> button of the ImageJ launcher.

toolset

Usage

Make a line-selection on the image covering a repetitive structure. Set the line-width of the line selection to cover the width of the structure of interest to smooth the plot. Right-click on the tool-button and adjust the tolerance-option to ignore small local minima. Press the tool-button to measure the mean distance between the minima.

Options

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  • tolerance - the minimum difference needed to separate two minima
  • remove edge minima - if checked minima at the beginning and the end of the selection are excluded
  • show plot - if checked the profile plot with the detected minima is shown
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