NDPI_Export_Regions_Tool
WORK IN PROGRESS: This is not currently working. Calculating the regions from the small image is to inexact. It should be possible to use metadata only, but currently the regions are wrong.
The tool exports rectangular regions, defined with the NDP.view 2 software from the highest resolution version of the image and saves them as tif-files.
You can find the source code in git-hub here.
To install the tool, download the file ndpi_export_regions.ijm and save it into the folder macros/toolsets of your FIJI installation.
Select the "NDPI_Export_Regions_Tool" tool from the >> button of the ImageJ launcher.
Click the button and select the input folder. The input folder must contain pairs of ndpi and ndpa files. The regions will be exported to a subfolder of the input folder names zones.
The tool only exports rectangular regions.
The exported region is not exactly the region defined in the ndpa-file. There is a small shift between the two.
Volker Bäcker