Spine Analyzer
The tools allow to semi-automatically segment dendritic spines in 3D+t images and to measure their volumes and the intensities of the signal within in different channels over time.
You can find the source code in git-hub here.
You must have MorphoLibJ installed.
To install the tool download the file spine_analyzer.ijm and put it into the folder macros/toolsets of your FIJI installation. In FIJI, select the spine_analyzer-toolset from the more tools button >>. On the toolset, click on the Install or Update Tool (the rightmost tool of the toolset).
Note: In case you do not have jython installed the first time you run the installation, only jython will be installed. You then have to retsart FIJI and click on the Install or Update Tool again.
After the installation finished, restart FIJI. Select the spine_analyzer-toolset from the >>-button of the ImageJ launcher.
Volker Bäcker