Update submodules of benchmark

.github/workflows/main_unit_tests.yaml

@@ -59,3 +59,8 @@ jobs:
           run: |
             cd ${GITHUB_WORKSPACE}/pace
             pytest -x tests/main
+
+        - name: run baroclinic
+          run: |
+            cd ${GITHUB_WORKSPACE}/pace
+            mpiexec -np 6 --oversubscribe python -m pace.run examples/configs/baroclinic_c12.yaml

Dockerfile

@@ -16,7 +16,7 @@ RUN apt-get update && apt-get install -y make \
     python3-pip \
     git
 
-RUN pip3 install --upgrade setuptools wheel
+RUN pip3 install --upgrade pip setuptools wheel
 
 COPY . /pace
 

constraints.txt

@@ -261,7 +261,7 @@ nest-asyncio==1.6.0
     # via
     #   ipykernel
     #   nbclient
-netcdf4==1.7.0
+netcdf4==1.7.1
     # via
     #   -r requirements_dev.txt
     #   ndsl
@@ -515,7 +515,7 @@ wheel==0.43.0
     # via
     #   astunparse
     #   scikit-build
-xarray==2024.3.0
+xarray==2025.01.2
     # via
     #   -r requirements_dev.txt
     #   ndsl

examples/build_scripts/build_gaea_c5_gcc.sh

@@ -1,18 +1,22 @@
 #!/usr/bin/env bash
 
-# Example bash script to install Pace to run bare-metal on Gaea's c5 cluster
+# Example bash script to install Pace to run bare-metal on Gaea's c4 cluster
 
 set -e -x
 
 # module load necessary system software
-module use -a /usw/conda/modulefiles
 module rm PrgEnv-intel
 module load PrgEnv-gnu
-module load gcc-native/12.3
-module load boost/1.85.0
-module load miniforge
-
-export DACE_compiler_cpu_executable='which g++'
+module rm gcc
+module load gcc/12.2.0
+module load boost/1.79.0
+module load python/3.11.7
+
+export CC=`which gcc`
+export CXX=`which g++`
+export MPICC=`which mpicc`
+export MPICXX=`which mpicxx`
+export DACE_compiler_cpu_executable=${CXX}
 export GT4PY_EXTRA_COMPILE_ARGS="-O3 -ffast-math -fprefetch-loop-arrays -funroll-all-loops"
 export OPENMP_CPPFLAGS="-fopenmp -fopenmp-simd"
 export OPENMP_LDFLAGS="-fopenmp -fopenmp-simd"