Search results

How do you define neo(1) vs non-neo (0)

Status: Open.

#81 In XiaoTaoWang/NeoLoopFinder;

· emikana opened on Oct 28, 2025

vis.plot_genes ValueError: Invalid strand: havana

Status: Open.

#80 In XiaoTaoWang/NeoLoopFinder;

· emikana opened on Oct 23, 2025

assemble-complexSVs incompatible with EagleC2 output format

Status: Open.

#79 In XiaoTaoWang/NeoLoopFinder;

· futing0143 opened on Oct 22, 2025

classification of inversion may be translocation

Status: Open.

#77 In XiaoTaoWang/NeoLoopFinder;

· emikana opened on Oct 21, 2025

CNV-correction pipeline adjustments

Status: Open.

#76 In XiaoTaoWang/NeoLoopFinder;

· lu-r-lu opened on Oct 11, 2025

custom genome for calculate-cnv

Status: Open.

#75 In XiaoTaoWang/NeoLoopFinder;

· wangguihua1991 opened on Jul 22, 2025

Is there any way to obtain the regions within the neoTADs?

Status: Open.

#74 In XiaoTaoWang/NeoLoopFinder;

· AuraStephenson opened on May 2, 2025

DpnII in calculate-snv

Status: Open.

#72 In XiaoTaoWang/NeoLoopFinder;

· malonzm1 opened on Mar 20, 2025

Problem with calculate-cnv

Status: Open.

#71 In XiaoTaoWang/NeoLoopFinder;

· jmtobin257 opened on Mar 11, 2025

How can I use another human reference?

Status: Open.

#70 In XiaoTaoWang/NeoLoopFinder;

· sdjin87 opened on Jan 16, 2025

‘module 'numpy' has no attribute 'typeDict'’ while searchSVbyGene

Status: Open.

#69 In XiaoTaoWang/NeoLoopFinder;

· Wong718 opened on Sep 3, 2024

Error occurred when Plotting Genes

Status: Open.

#68 In XiaoTaoWang/NeoLoopFinder;

· ZJU-Plumber opened on Jul 22, 2024