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@mgxd mgxd commented Jun 13, 2025

Registrations will generally benefit with this enabled, so making it the default.

If only subject -> template registration is required, can disable with --no-multi-step-reg.

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codecov bot commented Jun 13, 2025

Codecov Report

Attention: Patch coverage is 50.00000% with 3 lines in your changes missing coverage. Please review.

Project coverage is 57.73%. Comparing base (279dabc) to head (b0c4c46).

Files with missing lines Patch % Lines
nibabies/cli/parser.py 25.00% 2 Missing and 1 partial ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #470      +/-   ##
==========================================
+ Coverage   57.23%   57.73%   +0.50%     
==========================================
  Files          72       72              
  Lines        6811     6814       +3     
  Branches      829      830       +1     
==========================================
+ Hits         3898     3934      +36     
+ Misses       2704     2670      -34     
- Partials      209      210       +1     

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@mgxd mgxd force-pushed the enh/enable-multi-step-reg branch from c452792 to c6c19a2 Compare June 13, 2025 20:27
@mgxd mgxd marked this pull request as draft June 13, 2025 21:26
@mgxd mgxd force-pushed the enh/enable-multi-step-reg branch 2 times, most recently from 687a527 to 9ff906a Compare June 16, 2025 16:59
@mgxd mgxd force-pushed the enh/enable-multi-step-reg branch from 23caf40 to ca64254 Compare June 16, 2025 19:15
@mgxd mgxd marked this pull request as ready for review June 24, 2025 17:08
@mgxd mgxd merged commit d008a41 into master Jun 24, 2025
15 of 18 checks passed
@mgxd mgxd deleted the enh/enable-multi-step-reg branch June 24, 2025 17:09
mgxd added a commit that referenced this pull request Jun 24, 2025
25.1.0 (June 24, 2025)

First release of the 25.1.x series. A few key changes include a new workflow
for derivatives compatibility when an anatomical template is not present, and performing
a two step registration (currently only for MNI152NLin6Asym) is now the default behavior.
This can be disabled by adding `--no-multi-step-reg` to the command.

- Enhancements
  * ENH: Verify derivatives are compatible with anatomical reference (#459)
  * ENH: Make `--multi-step-reg` a boolean action, enable by default (#470)
  * ENH: Convert pooch retrieval to interface, allow setting cache dir (#467)

- Internals / Maintenance
  * MAINT: bump dependencies, test on python 3.13 (#468)
  * MAINT: deprecate `--clean-workdir` (#473)
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