v1.25.1

• Fix bioconda build -lphreads

v1.25.0 - Stats

• Multithreading counts and other improvements
  • Experimental table view in counts
• Multithreading stats and other improvements
  • stats now outputs a JSON with integer/float values (before it was strings only)

v1.23.0 - Convert to FASTA 🔀

• add seqfu tofasta that extracts sequences from GenBank, EMBL, GFF, etc (port of any2fasta)

v1.22.3 — 😸 cat fix

• seqfu cat --anvio fixed: it was requiring explicit --report to work

v1.22.2 — 📐L50 stats

• Add support for L50,75,90 statistics in seqfu stats using --index
  • ⚠️ this is experimental, the flag can change and the final output too

SeqFu 1.22.0 - 🌊 EBAME9

• Moved tests and code to fully support Nim 2.0
• SeqFu cat bug fix on prefixes, and addess --anvio shortcut to replicate anvi-script-reformat-fasta (for pipelines preparing data for Anvi'o
• SeqFu metadata now offers nf-core/rnaseq, nf-core/ampliseq and bactopia filesheets (experimental)
• SeqFu derep, improved docs
• Various fixes and documentation updates

Thanks to dialvarezs for Ignore incompatible-pointer-types error and to martin-g for improving Makefile and actions.

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What's Changed

• compile by @microbiomes in #22
• Make use of makes implicit variables by @martin-g in #23
• Ignore incompatible-pointer-types error by @dialvarezs in #25

New Contributors

• @microbiomes made their first contribution in #22
• @martin-g made their first contribution in #23
• @dialvarezs made their first contribution in #25

SeqFu v1.20.3

• Bugfix interleave/deinterleave #21

SeqFu v1.20.2 - 🇬🇲 Fajara

• Migrating to Nim 2.0

SeqFu v1.20.1 - 🇬🇲 Gambia

• Bugfix in seqfu metadata when producing a Manifest file for single end #18
• Added --translate to fu-orf

SeqFu v1.20.0 — Align faster ⇉

• Added genetic code 15 to fu-orf
• Rewrote Smith-Waterman code in nim without external libraries, with a 2X speed bump